def structure_plot(fig, molids, activations=None):
"""plot molecule structures"""
if activations != None:
assert len(activations[0]) == len(molids[0])
assert len(activations[1]) == len(molids[1])
id2name = defaultdict(str, rdl.get_id2name())
all_molids = molids[0] + molids[1]
all_activations = np.hstack(activations)
cr = utils.ceiled_root(len(all_molids))
for i, molid in enumerate(all_molids):
ax = fig.add_subplot(cr, cr, i+1)
try:
img = plt.imread(os.path.join(structures_path, molid + '.png'))
except Exception, e:
img = np.zeros(img.shape)
ax.imshow(img)
ax.set_xticks([])
ax.set_yticks([])
if i >= len(molids[0]):
for child in ax.get_children():
if isinstance(child, plt.matplotlib.spines.Spine):
child.set_color('#ff0000')
if activations != None:
ax.set_title('{}: {:.2f}'.format(id2name[molid], all_activations[i]),
rotation='20')
def plot_search_matrix(fig, desc_res, selection, method, glomeruli):
"""docstring for plot_search_matrix"""
if not glomeruli:
tmp_glomeruli = desc_res[selection].keys()
else:
tmp_glomeruli = glomeruli
n = utils.ceiled_root(len(tmp_glomeruli))
for i_glom, glom in enumerate(tmp_glomeruli):
mat = desc_res[selection][glom][method]
ax = fig.add_subplot(n, n, i_glom+1)
if np.max(mat) < 0:
ax.imshow(np.zeros(mat.shape), interpolation='nearest', cmap=plt.cm.gray)
else:
ax.imshow(mat, interpolation='nearest', cmap=plt.cm.gray, vmin=0)
ax.set_ylabel('{}'.format(glom))
ax.set_yticks([])
ax.set_xticks([])
ax.set_xlabel('{:.2f}'.format(np.max(mat)))
fig.subplots_adjust(hspace=0.4)