Example #1
0
MODEL_FILE_NAME = "largerpathway.xml"

MODEL_FILE = Path(pkg_resources.resource_filename(
        "libsbml_draw",
        "model/data/" + MODEL_FILE_NAME))


sl = SBMLlayout(str(MODEL_FILE))

sl._describeModel()

assert sl.getNumberOfNodes() == 6
assert sl.getNumberOfReactions() == 5

assert sl.getNodeFontSize("ABCDEFG") == 12
assert sl.getNodeFontWeight("F") == "normal"

assert sl.getNodeFillColor("E") == "#a0e0a030"

sl.drawNetwork("larger_pathway.png")

# sl.setReactionCurveWidth("all", 12)

sl.drawNetwork()


sl.writeSBMLFile("ftest_larger_pathway.xml")


slr =  SBMLlayout("ftest_larger_pathway.xml")
Example #2
0
assert sl.getNumberOfReactions() == 6

sl.setNodeEdgeColor("X1", "#ff0000")
sl.setNodeFillColor("X1", "#ff000030")
sl.setNodeEdgeWidth("X1", 3)

assert sl.getNodeEdgeColor("X1") == "#ff0000ff"
assert sl.getNodeFillColor("X1") == "#ff000030"
assert sl.getNodeEdgeWidth("X1") == 3

assert sl.getNodeEdgeColor("A") == "#0000ff"
assert sl.getNodeFillColor("A") == "#c9e0fb"

sl.setNodeFontWeight(["A", "B", "C", "D"], "bold")

assert sl.getNodeFontWeight("B") == "bold"

sl.setReactionEdgeColor("_J0", "#ff0000", role_name="product")
sl.setReactionEdgeColor("_J1", "#ff00ff", role_name="substrate")
sl.setReactionEdgeColor("_J2", "#ff00ff", role_name="product")
sl.setReactionEdgeColor("_J5", "#00ff00", species="D")
sl.setReactionEdgeColor("_J3", "#ffff00", role_name="product")
sl.setReactionEdgeColor("_J4", "#00ffff")

assert sl.getReactionEdgeColor("_J0")[0] == ('X0', 'SUBSTRATE', '#0000ff')
assert sl.getReactionEdgeColor("_J0")[1] == ('A', 'PRODUCT', '#ff0000ff')

assert sl.getReactionEdgeColor("_J1")[0] == ("A", "SUBSTRATE", "#ff00ffff")
assert sl.getReactionEdgeColor("_J1")[1] == ("B", "PRODUCT", "#0000ff")

assert sl.getReactionEdgeColor("_J2")[0] == ('B', 'SUBSTRATE', '#0000ff')