def service_info(self, service):
ret = {
"Category": service.getCategory().Title(),
"Category_uid": service.getCategory().UID(),
"Service": service.Title(),
"Service_uid": service.UID(),
"Keyword": service.getKeyword(),
"PointOfCapture": service.getPointOfCapture(),
"PointOfCapture_title": POINTS_OF_CAPTURE.getValue(service.getPointOfCapture()),
}
return ret
def __call__(self):
if 'transition' in self.request.form:
doActionFor(self.context, self.request.form['transition'])
## render header table
self.header_table = HeaderTableView(self.context, self.request)
## Create Sample Partitions table
parts_table = None
if not self.allow_edit:
p = SamplePartitionsView(self.context, self.request)
p.allow_edit = self.allow_edit
p.show_select_column = self.allow_edit
p.show_workflow_action_buttons = self.allow_edit
p.show_column_toggles = False
p.show_select_all_checkbox = False
p.review_states[0]['transitions'] = [
{
'id': 'empty'
},
] # none
parts_table = p.contents_table()
self.parts = parts_table
## Create Field and Lab Analyses tables
self.tables = {}
if not self.allow_edit:
for poc in POINTS_OF_CAPTURE:
if not self.context.getAnalyses({'getPointOfCapture': poc}):
continue
t = SampleAnalysesView(self.context,
self.request,
getPointOfCapture=poc,
sort_on='getServiceTitle')
t.form_id = "sample_%s_analyses" % poc
if poc == 'field':
t.review_states[0]['columns'].remove('DueDate')
t.show_column_toggles = False
t.review_states[0]['transitions'] = [{
'id': 'submit'
}, {
'id': 'retract'
}, {
'id': 'verify'
}]
self.tables[POINTS_OF_CAPTURE.getValue(
poc)] = t.contents_table()
return self.template()
def __call__(self):
ar = self.context
workflow = getToolByName(ar, 'portal_workflow')
if workflow.getInfoFor(ar, 'cancellation_state') == "cancelled":
self.request.response.redirect(ar.absolute_url())
elif not (getSecurityManager().checkPermission(EditResults, ar)):
self.request.response.redirect(ar.absolute_url())
else:
self.tables = {}
show_cats = self.context.bika_setup.getCategoriseAnalysisServices()
for poc in POINTS_OF_CAPTURE:
if self.context.getAnalyses(getPointOfCapture=poc):
t = self.createAnalysesView(ar,
self.request,
getPointOfCapture=poc,
sort_on='getServiceTitle',
show_categories=show_cats)
t.form_id = "ar_manage_results_%s" % poc
t.allow_edit = True
t.review_states[0]['transitions'] = [{
'id': 'submit'
}, {
'id': 'retract'
}, {
'id': 'verify'
}]
t.show_select_column = True
poc_value = POINTS_OF_CAPTURE.getValue(poc)
self.tables[poc_value] = t.contents_table()
# If a general retracted is done, rise a waring
if workflow.getInfoFor(ar, 'review_state') == 'sample_received':
allstatus = list()
for analysis in ar.getAnalyses():
status = workflow.getInfoFor(analysis.getObject(),
'review_state')
if status not in [
'retracted', 'to_be_verified', 'verified'
]:
allstatus = []
break
else:
allstatus.append(status)
if len(allstatus) > 0:
message = "General Retract Done"
self.context.plone_utils.addPortalMessage(
message, 'warning')
self.checkInstrumentsValidity()
return self.template()
def service_info(self, service):
ret = {
"Category":
service.getCategory().Title(),
"Category_uid":
service.getCategory().UID(),
"Service":
service.Title(),
"Service_uid":
service.UID(),
"Keyword":
service.getKeyword(),
"PointOfCapture":
service.getPointOfCapture(),
"PointOfCapture_title":
POINTS_OF_CAPTURE.getValue(service.getPointOfCapture()),
}
return ret
def __call__(self):
ar = self.context
workflow = getToolByName(ar, 'portal_workflow')
if workflow.getInfoFor(ar, 'cancellation_state') == "cancelled":
self.request.response.redirect(ar.absolute_url())
elif not(getSecurityManager().checkPermission(EditResults, ar)):
self.request.response.redirect(ar.absolute_url())
else:
self.tables = {}
show_cats = self.context.bika_setup.getCategoriseAnalysisServices()
for poc in POINTS_OF_CAPTURE:
if self.context.getAnalyses(getPointOfCapture=poc):
t = self.createAnalysesView(ar,
self.request,
getPointOfCapture=poc,
sort_on='getServiceTitle',
show_categories=show_cats)
t.form_id = "ar_manage_results_%s" % poc
t.allow_edit = True
t.review_states[0]['transitions'] = [{'id': 'submit'},
{'id': 'retract'},
{'id': 'verify'}]
t.show_select_column = True
poc_value = POINTS_OF_CAPTURE.getValue(poc)
self.tables[poc_value] = t.contents_table()
# If a general retracted is done, rise a waring
if workflow.getInfoFor(ar, 'review_state') == 'sample_received':
allstatus = list()
for analysis in ar.getAnalyses():
status = workflow.getInfoFor(analysis.getObject(), 'review_state')
if status not in ['retracted','to_be_verified','verified']:
allstatus = []
break
else:
allstatus.append(status)
if len(allstatus) > 0:
message = "General Retract Done"
self.context.plone_utils.addPortalMessage(message, 'warning')
self.checkInstrumentsValidity()
return self.template()
def __call__(self):
if 'transition' in self.request.form:
doActionFor(self.context, self.request.form['transition'])
## render header table
self.header_table = HeaderTableView(self.context, self.request)
## Create Sample Partitions table
parts_table = None
if not self.allow_edit:
p = SamplePartitionsView(self.context, self.request)
p.allow_edit = self.allow_edit
p.show_select_column = self.allow_edit
p.show_workflow_action_buttons = self.allow_edit
p.show_column_toggles = False
p.show_select_all_checkbox = False
p.review_states[0]['transitions'] = [{'id': 'empty'},] # none
parts_table = p.contents_table()
self.parts = parts_table
## Create Field and Lab Analyses tables
self.tables = {}
if not self.allow_edit:
for poc in POINTS_OF_CAPTURE:
if not self.context.getAnalyses({'getPointOfCapture': poc}):
continue
t = SampleAnalysesView(self.context,
self.request,
getPointOfCapture = poc,
sort_on = 'getServiceTitle')
t.form_id = "sample_%s_analyses" % poc
if poc == 'field':
t.review_states[0]['columns'].remove('DueDate')
t.show_column_toggles = False
t.review_states[0]['transitions'] = [{'id':'submit'},
{'id':'retract'},
{'id':'verify'}]
self.tables[POINTS_OF_CAPTURE.getValue(poc)] = t.contents_table()
return self.template()
def _analysis_data(self, analysis):
""" Returns a dict that represents the analysis
"""
decimalmark = analysis.aq_parent.aq_parent.getDecimalMark()
keyword = analysis.getKeyword()
service = analysis.getService()
andict = {'obj': analysis,
'id': analysis.id,
'title': analysis.Title(),
'keyword': keyword,
'scientific_name': service.getScientificName(),
'accredited': service.getAccredited(),
'point_of_capture': to_utf8(POINTS_OF_CAPTURE.getValue(service.getPointOfCapture())),
'category': to_utf8(service.getCategoryTitle()),
'result': analysis.getResult(),
'unit': to_utf8(service.getUnit()),
'formatted_unit': format_supsub(to_utf8(service.getUnit())),
'capture_date': analysis.getResultCaptureDate(),
'request_id': analysis.aq_parent.getId(),
'formatted_result': '',
'uncertainty': analysis.getUncertainty(),
'formatted_uncertainty': '',
'retested': analysis.getRetested(),
'remarks': to_utf8(analysis.getRemarks()),
'resultdm': to_utf8(analysis.getResultDM()),
'outofrange': False,
'type': analysis.portal_type,
'reftype': analysis.getReferenceType() \
if hasattr(analysis, 'getReferenceType')
else None,
'worksheet': None,
'specs': {},
'formatted_specs': ''}
andict['refsample'] = analysis.getSample().id \
if analysis.portal_type == 'Analysis' \
else '%s - %s' % (analysis.aq_parent.id, analysis.aq_parent.Title())
# Which analysis specs must be used?
# Try first with those defined at AR Publish Specs level
if analysis.portal_type == 'ReferenceAnalysis':
# The analysis is a Control or Blank. We might use the
# reference results instead other specs
uid = analysis.getServiceUID()
specs = analysis.aq_parent.getResultsRangeDict().get(uid, {})
elif analysis.portal_type == 'DuplicateAnalysis':
specs = analysis.getAnalysisSpecs()
else:
ar = analysis.aq_parent
specs = ar.getPublicationSpecification()
if not specs or keyword not in specs.getResultsRangeDict():
specs = analysis.getAnalysisSpecs()
specs = specs.getResultsRangeDict().get(keyword, {}) \
if specs else {}
andict['specs'] = specs
scinot = self.context.bika_setup.getScientificNotationReport()
andict['formatted_result'] = analysis.getFormattedResult(
specs=specs, sciformat=int(scinot), decimalmark=decimalmark)
fs = ''
if specs.get('min', None) and specs.get('max', None):
fs = '%s - %s' % (specs['min'], specs['max'])
elif specs.get('min', None):
fs = '> %s' % specs['min']
elif specs.get('max', None):
fs = '< %s' % specs['max']
andict['formatted_specs'] = formatDecimalMark(fs, decimalmark)
andict['formatted_uncertainty'] = format_uncertainty(
analysis,
analysis.getResult(),
decimalmark=decimalmark,
sciformat=int(scinot))
# Out of range?
if specs:
adapters = getAdapters((analysis, ), IResultOutOfRange)
bsc = getToolByName(self.context, "bika_setup_catalog")
for name, adapter in adapters:
ret = adapter(specification=specs)
if ret and ret['out_of_range']:
andict['outofrange'] = True
break
return andict
def __call__(self):
ar = self.context
workflow = getToolByName(self.context, 'portal_workflow')
if 'transition' in self.request.form:
doActionFor(self.context, self.request.form['transition'])
# Contacts get expanded for view
contact = self.context.getContact()
contacts = []
for cc in self.context.getCCContact():
contacts.append(cc)
if contact in contacts:
contacts.remove(contact)
ccemails = []
for cc in contacts:
ccemails.append("%s <<a href='mailto:%s'>%s</a>>"
% (cc.Title(), cc.getEmailAddress(), cc.getEmailAddress()))
# CC Emails become mailto links
emails = self.context.getCCEmails()
if isinstance(emails, str):
emails = emails and [emails, ] or []
cc_emails = []
cc_hrefs = []
for cc in emails:
cc_emails.append(cc)
cc_hrefs.append("<a href='mailto:%s'>%s</a>" % (cc, cc))
# render header table
self.header_table = HeaderTableView(self.context, self.request)()
# Create Partitions View for this ARs sample
p = SamplePartitionsView(self.context.getSample(), self.request)
p.show_column_toggles = False
self.parts = p.contents_table()
# Create Field and Lab Analyses tables
self.tables = {}
for poc in POINTS_OF_CAPTURE:
if self.context.getAnalyses(getPointOfCapture=poc):
t = self.createAnalysesView(ar,
self.request,
getPointOfCapture=poc,
show_categories=self.context.bika_setup.getCategoriseAnalysisServices())
t.allow_edit = True
t.form_id = "%s_analyses" % poc
t.review_states[0]['transitions'] = [{'id': 'submit'},
{'id': 'retract'},
{'id': 'verify'}]
t.show_workflow_action_buttons = True
t.show_select_column = True
if getSecurityManager().checkPermission(EditFieldResults, self.context) \
and poc == 'field':
t.review_states[0]['columns'].remove('DueDate')
self.tables[POINTS_OF_CAPTURE.getValue(poc)] = t.contents_table()
# Un-captured field analyses may cause confusion
if ar.getAnalyses(getPointOfCapture='field',
review_state=['sampled', 'sample_due']):
message = _("There are field analyses without submitted results.")
self.addMessage(message, 'info')
# Create QC Analyses View for this AR
show_cats = self.context.bika_setup.getCategoriseAnalysisServices()
qcview = self.createQCAnalyesView(ar,
self.request,
show_categories=show_cats)
qcview.allow_edit = False
qcview.show_select_column = False
qcview.show_workflow_action_buttons = False
qcview.form_id = "%s_qcanalyses"
qcview.review_states[0]['transitions'] = [{'id': 'submit'},
{'id': 'retract'},
{'id': 'verify'}]
self.qctable = qcview.contents_table()
# Create the ResultsInterpretation by department view
from dependencies.dependency import ARResultsInterpretationView
self.riview = ARResultsInterpretationView(ar, self.request)
# If a general retracted is done, rise a waring
if workflow.getInfoFor(ar, 'review_state') == 'sample_received':
allstatus = list()
for analysis in ar.getAnalyses():
status = workflow.getInfoFor(analysis.getObject(), 'review_state')
if status not in ['retracted','to_be_verified','verified']:
allstatus = []
break
else:
allstatus.append(status)
if len(allstatus) > 0:
self.addMessage("General Retract Done", 'warning')
# If is a retracted AR, show the link to child AR and show a warn msg
if workflow.getInfoFor(ar, 'review_state') == 'invalid':
childar = hasattr(ar, 'getChildAnalysisRequest') \
and ar.getChildAnalysisRequest() or None
message = _('These results have been withdrawn and are '
'listed here for trace-ability purposes. Please follow '
'the link to the retest')
if childar:
message = (message + " %s.") % childar.getRequestID()
else:
message = message + "."
self.addMessage(message, 'warning')
# If is an AR automatically generated due to a Retraction, show it's
# parent AR information
if hasattr(ar, 'getParentAnalysisRequest') \
and ar.getParentAnalysisRequest():
par = ar.getParentAnalysisRequest()
message = _('This Analysis Request has been '
'generated automatically due to '
'the retraction of the Analysis '
'Request ${retracted_request_id}.',
mapping={'retracted_request_id': par.getRequestID()})
self.addMessage(message, 'info')
self.renderMessages()
return self.template()
def _analysis_data(self, analysis, decimalmark=None):
keyword = analysis.getKeyword()
service = analysis.getService()
andict = {'obj': analysis,
'id': analysis.id,
'title': analysis.Title(),
'keyword': keyword,
'scientific_name': service.getScientificName(),
'accredited': service.getAccredited(),
'point_of_capture': to_utf8(POINTS_OF_CAPTURE.getValue(service.getPointOfCapture())),
'category': to_utf8(service.getCategoryTitle()),
'result': analysis.getResult(),
'isnumber': isnumber(analysis.getResult()),
'unit': to_utf8(service.getUnit()),
'formatted_unit': format_supsub(to_utf8(service.getUnit())),
'capture_date': analysis.getResultCaptureDate(),
'request_id': analysis.aq_parent.getId(),
'formatted_result': '',
'uncertainty': analysis.getUncertainty(),
'formatted_uncertainty': '',
'retested': analysis.getRetested(),
'remarks': to_utf8(analysis.getRemarks()),
'resultdm': to_utf8(analysis.getResultDM()),
'outofrange': False,
'type': analysis.portal_type,
'reftype': analysis.getReferenceType() \
if hasattr(analysis, 'getReferenceType')
else None,
'worksheet': None,
'specs': {},
'formatted_specs': ''}
if analysis.portal_type == 'DuplicateAnalysis':
andict['reftype'] = 'd'
ws = analysis.getBackReferences('WorksheetAnalysis')
andict['worksheet'] = ws[0].id if ws and len(ws) > 0 else None
andict['worksheet_url'] = ws[0].absolute_url if ws and len(ws) > 0 else None
andict['refsample'] = analysis.getSample().id \
if analysis.portal_type == 'Analysis' \
else '%s - %s' % (analysis.aq_parent.id, analysis.aq_parent.Title())
# Which analysis specs must be used?
# Try first with those defined at AR Publish Specs level
if analysis.portal_type == 'ReferenceAnalysis':
# The analysis is a Control or Blank. We might use the
# reference results instead other specs
uid = analysis.getServiceUID()
specs = analysis.aq_parent.getResultsRangeDict().get(uid, {})
elif analysis.portal_type == 'DuplicateAnalysis':
specs = analysis.getAnalysisSpecs();
else:
ar = analysis.aq_parent
specs = ar.getPublicationSpecification()
if not specs or keyword not in specs.getResultsRangeDict():
specs = analysis.getAnalysisSpecs()
specs = specs.getResultsRangeDict().get(keyword, {}) \
if specs else {}
andict['specs'] = specs
scinot = self.context.bika_setup.getScientificNotationReport()
andict['formatted_result'] = analysis.getFormattedResult(specs=specs, sciformat=int(scinot), decimalmark=decimalmark)
fs = ''
if specs.get('min', None) and specs.get('max', None):
fs = '%s - %s' % (specs['min'], specs['max'])
elif specs.get('min', None):
fs = '> %s' % specs['min']
elif specs.get('max', None):
fs = '< %s' % specs['max']
andict['formatted_specs'] = formatDecimalMark(fs, decimalmark)
andict['formatted_uncertainty'] = format_uncertainty(analysis, analysis.getResult(), decimalmark=decimalmark, sciformat=int(scinot))
# Out of range?
if specs:
adapters = getAdapters((analysis, ), IResultOutOfRange)
bsc = getToolByName(self.context, "bika_setup_catalog")
for name, adapter in adapters:
ret = adapter(specification=specs)
if ret and ret['out_of_range']:
andict['outofrange'] = True
break
return andict
def __call__(self):
ar = self.context
workflow = getToolByName(self.context, 'portal_workflow')
if 'transition' in self.request.form:
doActionFor(self.context, self.request.form['transition'])
# Contacts get expanded for view
contact = self.context.getContact()
contacts = []
for cc in self.context.getCCContact():
contacts.append(cc)
if contact in contacts:
contacts.remove(contact)
ccemails = []
for cc in contacts:
ccemails.append(
"%s <<a href='mailto:%s'>%s</a>>" %
(cc.Title(), cc.getEmailAddress(), cc.getEmailAddress()))
# CC Emails become mailto links
emails = self.context.getCCEmails()
if isinstance(emails, str):
emails = emails and [
emails,
] or []
cc_emails = []
cc_hrefs = []
for cc in emails:
cc_emails.append(cc)
cc_hrefs.append("<a href='mailto:%s'>%s</a>" % (cc, cc))
# render header table
self.header_table = HeaderTableView(self.context, self.request)()
# Create Partitions View for this ARs sample
p = SamplePartitionsView(self.context.getSample(), self.request)
p.show_column_toggles = False
self.parts = p.contents_table()
# Create Field and Lab Analyses tables
self.tables = {}
for poc in POINTS_OF_CAPTURE:
if self.context.getAnalyses(getPointOfCapture=poc):
t = self.createAnalysesView(
ar,
self.request,
getPointOfCapture=poc,
show_categories=self.context.bika_setup.
getCategoriseAnalysisServices())
t.allow_edit = True
t.form_id = "%s_analyses" % poc
t.review_states[0]['transitions'] = [{
'id': 'submit'
}, {
'id': 'retract'
}, {
'id': 'verify'
}]
t.show_workflow_action_buttons = True
t.show_select_column = True
if getSecurityManager().checkPermission(EditFieldResults, self.context) \
and poc == 'field':
t.review_states[0]['columns'].remove('DueDate')
self.tables[POINTS_OF_CAPTURE.getValue(
poc)] = t.contents_table()
# Un-captured field analyses may cause confusion
if ar.getAnalyses(getPointOfCapture='field',
review_state=['sampled', 'sample_due']):
message = _("There are field analyses without submitted results.")
self.addMessage(message, 'info')
# Create QC Analyses View for this AR
show_cats = self.context.bika_setup.getCategoriseAnalysisServices()
qcview = self.createQCAnalyesView(ar,
self.request,
show_categories=show_cats)
qcview.allow_edit = False
qcview.show_select_column = False
qcview.show_workflow_action_buttons = False
qcview.form_id = "%s_qcanalyses"
qcview.review_states[0]['transitions'] = [{
'id': 'submit'
}, {
'id': 'retract'
}, {
'id': 'verify'
}]
self.qctable = qcview.contents_table()
# Create the ResultsInterpretation by department view
from dependencies.dependency import ARResultsInterpretationView
self.riview = ARResultsInterpretationView(ar, self.request)
# If a general retracted is done, rise a waring
if workflow.getInfoFor(ar, 'review_state') == 'sample_received':
allstatus = list()
for analysis in ar.getAnalyses():
status = workflow.getInfoFor(analysis.getObject(),
'review_state')
if status not in ['retracted', 'to_be_verified', 'verified']:
allstatus = []
break
else:
allstatus.append(status)
if len(allstatus) > 0:
self.addMessage("General Retract Done", 'warning')
# If is a retracted AR, show the link to child AR and show a warn msg
if workflow.getInfoFor(ar, 'review_state') == 'invalid':
childar = hasattr(ar, 'getChildAnalysisRequest') \
and ar.getChildAnalysisRequest() or None
message = _(
'These results have been withdrawn and are '
'listed here for trace-ability purposes. Please follow '
'the link to the retest')
if childar:
message = (message + " %s.") % childar.getRequestID()
else:
message = message + "."
self.addMessage(message, 'warning')
# If is an AR automatically generated due to a Retraction, show it's
# parent AR information
if hasattr(ar, 'getParentAnalysisRequest') \
and ar.getParentAnalysisRequest():
par = ar.getParentAnalysisRequest()
message = _(
'This Analysis Request has been '
'generated automatically due to '
'the retraction of the Analysis '
'Request ${retracted_request_id}.',
mapping={'retracted_request_id': par.getRequestID()})
self.addMessage(message, 'info')
self.renderMessages()
return self.template()
