def __init__(self,fname,appwin):
inf=open(fname,'r')
self.appwin=appwin
self.gl=lindnaface.infile(inf)
self.m=lindnaface.mark(self.gl)
self.pics=0
self.textfont="-*-simsun-*-*-*-*-12-*-*-*-*-*-iso8859-*"
self.picfont="-*-simsun-*-*-*-*-16-*-*-*-*-*-iso8859-*"
self.dpainted={'Nuclear protein SET':0,
'SET':0,
'Nuclear protein Zn2+-binding':0,
'Pre-SET':0,
'YDG_SRA':0,
'Myb DNA-binding domain':0,
'SANT':0,
'A+T-hook':0,
'AT_hook':0,
'Chromo domain':0,
'TPR':0,
'DUF260':0,
'PHD':0,
'PWWP':0,
'zf-CXXC':0,
'zf-MYND':0,
'zf-C2H2':0,
'AWS':0,
'SET-related region':0,
'Post-SET':0,
'Tesmin/TSO1-like CXC domain':0,
'FY-rich domain, N-terminal':0,
'FY-rich domain, C-terminal':0,
'BAH':0,
'Whey acidic protein, core region':0,
'Cytochrome c heme-binding site':0,
'ank':0,
'Proline-rich extensin':0}
for i in range(len(self.m)-1):
lindnaface.sort(self.gl,self.m[i]+1,self.m[i+1])
#!/usr/bin/python
import lindnaface
import sys
if len(sys.argv)>1:
infile=sys.argv[1]
else:
infile=raw_input("please enter the Pfam file:\n")
inf=open(infile,'r')
outf=open('outfile.2lindna','w')
gl=lindnaface.infile(inf)
m=lindnaface.mark(gl)
for i in range(len(m)-1):
lindnaface.sort(gl,m[i]+1,m[i+1])
lindnaface.outfile(outf,gl)
inf.close()
outf.close()
