Python WithTempDir Examples

Example #1

    def setUp(self):
        WithTempDir.setUp(self)

        self.matrix = [[0.0, 0.5, 0.67, 0.8, 0.2], [0.5, 0.0, 0.4, 0.7, 0.6],
                       [0.67, 0.4, 0.0, 0.8, 0.8], [0.8, 0.7, 0.8, 0.0, 0.3],
                       [0.2, 0.6, 0.8, 0.3, 0.0]]
        self.taxa = ['German', 'Swedish', 'Icelandic', 'English', 'Dutch']

Example #2

File: test_partial.py Project: sangeeta97/lingpy

 def setUp(self):
     WithTempDir.setUp(self)
     self.part = Partial(test_data('partial_cognates.tsv'),
                         segments='segments',
                         split_on_tones=True)
     self.part2 = Partial(test_data('partial_cognates-scored.tsv'),
                          segments='segments')

Example #3

File: test_plot.py Project: vermillionbee/lingpy

    def setUp(self):
        WithTempDir.setUp(self)
        self.gls = [('Haerbin', 0), ('Beijing', 0), ('Xi’an', 0),
                    ('Lanzhou', 0), ('Kunming', 1), ('Tianjin', 0),
                    ('edge.13', 1), ('edge.11', 0)]

        self.scenarios = [['p1', self.gls],
                          [
                              'p2',
                              [('Taiyuan', 0), ('Nanning', 0), ('Wenzhou', 0),
                               ('Lanzhou', 0), ('edge.24', 0), ('Pingyao', 0),
                               ('Jinan', 1), ('edge.6', 0), ('Kunming', 0),
                               ('Zhengzhou', 0), ('Xi’an', 0), ('edge.10', 0),
                               ('edge.14', 0), ('Shexian', 0), ('edge.26', 1),
                               ('Suzhou', 0)]
                          ]]

        self.tree = "((((((((Taiyuan,Pingyao,Huhehaote)," \
                    "((((Xi’an,Xining,Zhengzhou)," \
                    "(Lanzhou,Yinchuan,Wulumuqi))," \
                    "(((Tianjin,Jinan),Qingdao),Beijing,Haerbin))," \
                    "(((Guiyang,Kunming),Chengdu,Wuhan)," \
                    "(Nanjing,Hefei)))),(Xiangtan,Changsha)),Nanchang)," \
                    "(Shexian,Tunxi)),((Shanghai,Suzhou,Hangzhou),Wenzhou))," \
                    "(((Xianggang,Guangzhou),Nanning),(Meixian,Taoyuan)))," \
                    "((((Xiamen,Taibei),Shantou,Haikou),Fuzhou),Jian’ou));"

Example #4

File: test_linkcomm.py Project: SimonGreenhill/lingpy

 def setUp(self):
     WithTempDir.setUp(self)
     self.hlc = link_clustering.HLC(
         {
             "a": set(["b", "c"]),
             "b": set(["c"]),
             "c": set(["a"])
         }, set([("a", "b"), ("b", "c"), ("a", "c")]))

Example #5

File: test_acd.py Project: LinguList/lingpy

 def setUp(self):
     WithTempDir.setUp(self)
     self.lex = LexStat(test_data('KSL.qlc'))
     self.part = Partial(test_data('partial_cognates.tsv'),
                         segments='segments')
     self.part.add_entries('pid1', 'partial_cognate_sets', lambda x: x)
     self.part.add_entries('pid2', 'partialids2',
                           lambda x: [int(y) for y in x.split(' ')])

Example #6

 def setUp(self):
     WithTempDir.setUp(self)
     self.lex = LexStat(test_data('KSL.qlc'))
     self.part = Partial(test_data('partial_cognates.tsv'),
                         segments='segments')
     self.part.add_entries('pid1', 'partial_cognate_sets', lambda x: x)
     self.part.add_entries('pid2', 'partialids2',
                           lambda x: [int(y) for y in x.split(' ')])

Example #7

File: test_linkcomm.py Project: vermillionbee/lingpy

 def setUp(self):
     WithTempDir.setUp(self)
     self.hlc = link_clustering.HLC(
         {
             "a": {"b", "c"},
             "b": {"c"},
             "c": {"a"}
         }, {("a", "b"), ("b", "c"), ("a", "c")})

Example #8

File: test_linkcomm.py Project: LinguList/lingpy

 def setUp(self):
     WithTempDir.setUp(self)
     self.hlc = link_clustering.HLC(
         {"a": {"b", "c"},
          "b": {"c"},
          "c": {"a"}
          },
         {("a", "b"), ("b", "c"), ("a", "c")}
     )

Example #9

    def setUp(self):
        WithTempDir.setUp(self)
        self.tmp_path('_test').mkdir()
        with self.tmp_path('_test', 'converter').open(mode='w',
                                                      encoding='utf8') as fp:
            fp.write("""\
p : p, ɸ, p͡f
b : b, β, b͡v
f : f
v : v
m : m, ɱ
w : w, ɰ, ʋ, ʍ
8 : θ, θ, Ɵ, ð""")

        with self.tmp_path('_test', 'scorer').open(mode='w',
                                                   encoding='utf8') as fp:
            fp.write(SCORER)

Example #10

File: test_plot.py Project: LinguList/lingpy

    def setUp(self):
        WithTempDir.setUp(self)
        self.gls = [('Haerbin', 0),
                    ('Beijing', 0),
                    ('Xi’an', 0),
                    ('Lanzhou', 0),
                    ('Kunming', 1),
                    ('Tianjin', 0),
                    ('edge.13', 1),
                    ('edge.11', 0)]

        self.scenarios = [
            ['p1', self.gls],
            ['p2', [('Taiyuan', 0),
                    ('Nanning', 0),
                    ('Wenzhou', 0),
                    ('Lanzhou', 0),
                    ('edge.24', 0),
                    ('Pingyao', 0),
                    ('Jinan', 1),
                    ('edge.6', 0),
                    ('Kunming', 0),
                    ('Zhengzhou', 0),
                    ('Xi’an', 0),
                    ('edge.10', 0),
                    ('edge.14', 0),
                    ('Shexian', 0),
                    ('edge.26', 1),
                    ('Suzhou', 0)]]]

        self.tree = "((((((((Taiyuan,Pingyao,Huhehaote)," \
                    "((((Xi’an,Xining,Zhengzhou)," \
                    "(Lanzhou,Yinchuan,Wulumuqi))," \
                    "(((Tianjin,Jinan),Qingdao),Beijing,Haerbin))," \
                    "(((Guiyang,Kunming),Chengdu,Wuhan)," \
                    "(Nanjing,Hefei)))),(Xiangtan,Changsha)),Nanchang)," \
                    "(Shexian,Tunxi)),((Shanghai,Suzhou,Hangzhou),Wenzhou))," \
                    "(((Xianggang,Guangzhou),Nanning),(Meixian,Taoyuan)))," \
                    "((((Xiamen,Taibei),Shantou,Haikou),Fuzhou),Jian’ou));"

Example #11

File: test_ops.py Project: LinguList/lingpy

 def setUp(self):
     WithTempDir.setUp(self)
     self.wordlist = Wordlist(test_data('KSL.qlc'))
     self.wordlist2 = Wordlist(test_data('KSL4.qlc'))

Example #12

File: test_config.py Project: LinguList/lingpy

 def setUp(self):
     WithTempDir.setUp(self)
     self.cfg = os.path.join(self.tmp.as_posix(), '.config')

Example #13

File: test_colexification.py Project: LinguList/lingpy

 def setUp(self):
     WithTempDir.setUp(self)
     self.wordlist = Wordlist(test_data('colexification.tsv'))
     self.cols = colx._get_colexifications(self.wordlist)

Example #14

File: test_ops.py Project: vermillionbee/lingpy

 def setUp(self):
     WithTempDir.setUp(self)
     self.wordlist = Wordlist(test_data('KSL.qlc'))
     self.wordlist2 = Wordlist(test_data('KSL4.qlc'))

Example #15

File: test_lexstat.py Project: SimonGreenhill/lingpy

 def setUp(self):
     WithTempDir.setUp(self)
     self.lex = self._make_one(test_data('KSL.qlc'))
     self.log = get_log()
     self.get_scorer_kw = dict(runs=10, rands=10, limit=100)

Example #16

File: test_phylogeny.py Project: vermillionbee/lingpy

 def setUp(self):
     WithTempDir.setUp(self)
     self.inputfile = os.path.join(
         os.path.dirname(lingpy.__file__), 'tests', 'test_data', 'phybo.qlc')

Example #17

File: test_partial.py Project: LinguList/lingpy

 def setUp(self):
     WithTempDir.setUp(self)
     self.part = Partial(test_data('partial_cognates.tsv'),
                         segments='segments')
     self.part2 = Partial(test_data('partial_cognates-scored.tsv'),
                          segments='segments')

Example #18

File: test_wordlist.py Project: vermillionbee/lingpy

 def setUp(self):
     WithTempDir.setUp(self)
     self.wordlist = Wordlist(test_data('KSL.qlc'))
     self.wordlist2 = Wordlist(test_data('good_file.tsv'))

Example #19

File: test__phylogeny.py Project: SimonGreenhill/lingpy

 def setUp(self):
     WithTempDir.setUp(self)
     self.ifile = test_data('phybo.qlc')

Example #20

File: test_wordlist.py Project: LinguList/lingpy

 def setUp(self):
     WithTempDir.setUp(self)
     self.wordlist = Wordlist(test_data('KSL.qlc'))
     self.wordlist2 = Wordlist(test_data('good_file.tsv'))

Example #21

File: test__phylogeny.py Project: LinguList/lingpy

 def setUp(self):
     WithTempDir.setUp(self)
     self.ifile = test_data('phybo.qlc')

Example #22

File: test_config.py Project: SimonGreenhill/lingpy

 def setUp(self):
     WithTempDir.setUp(self)
     self.cfg = os.path.join(self.tmp.as_posix(), '.config')

Example #23

 def setUp(self):
     WithTempDir.setUp(self)
     self.newick = '(((a,b),(c,d)),e);'
     self.tree = Tree(self.newick)

Example #24

 def tearDown(self):
     # Reset the global _logger to make sure, it's recreated with appropriate
     # config when the other tests are run.
     log._logger = None
     WithTempDir.tearDown(self)

Example #25

File: test_log.py Project: LinguList/lingpy

 def tearDown(self):
     # Reset the global _logger to make sure, it's recreated with appropriate
     # config when the other tests are run.
     log._logger = None
     WithTempDir.tearDown(self)

Example #26

File: test_sca.py Project: LinguList/lingpy

 def setUp(self):
     WithTempDir.setUp(self)
     self.alm = Alignments(test_data('KSL2.qlc'), loans=False,
                           _interactive=False)
     self.alm.align()

Example #27

File: test_strings.py Project: vermillionbee/lingpy

 def setUp(self):
     WithTempDir.setUp(self)
     self.wordlist = Wordlist(test_data('GER.tsv'))

Example #28

File: test_sca.py Project: SimonGreenhill/lingpy

 def setUp(self):
     WithTempDir.setUp(self)
     self.alm = Alignments(test_data('KSL2.qlc'),
                           loans=False,
                           _interactive=False)
     self.alm.align()

Example #29

File: test_colexification.py Project: vermillionbee/lingpy

 def setUp(self):
     WithTempDir.setUp(self)
     self.wordlist = Wordlist(test_data('colexification.tsv'))
     self.cols = colx._get_colexifications(self.wordlist)