def create_plate(self):
self.plate = Plate(self)
self.plate.move(20, 20)
self.plate.clicked_callback(self.well_clicked)
def create_plate(self):
self.plate = Plate(self)
self.plate.move(20, 20)
self.plate.clicked_callback(self.well_clicked)
class WindowlessSetup(QtGui.QWidget):
def __init__(self):
super(WindowlessSetup, self).__init__()
self.filter_sample_table = True
self.currentPlate = None
self.plate = None
self.table = None
self.table_items = OrderedDict()
self.plate_docking = []
self.init_ui()
def init_ui(self):
font = QtGui.QFont()
font.setBold(True)
# font.setPointSize(20)
lbl = QtGui.QLabel(self)
lbl.move(20, 0)
lbl.setFont(font)
lbl.setText("Current Plate:")
self.currentPlate = QtGui.QLabel(self)
self.currentPlate.move(110, 0)
self.currentPlate.setText("Select or Create a Plate")
self.create_plate()
self.create_table()
self.create_sample_docking()
def create_plate(self):
self.plate = Plate(self)
self.plate.move(20, 20)
self.plate.clicked_callback(self.well_clicked)
def create_table(self):
font = QtGui.QFont()
font.setPointSize(20)
self.table = QtGui.QTableWidget(self)
self.table.setFont(font)
self.table.setColumnCount(1) # Sample Name
self.table.setColumnWidth(0, 400)
self.table.setRowCount(96) # 96 wells plate
self.table.setHorizontalHeaderLabels(['Sample'])
vertical_header_labels = []
for col in range(1, 13): # From 1 to 12
for row in range(ord('A'), ord('I')): # From A to H
idx = (row-ord('A'))+(col-1)*(ord('I')-ord('A'))
position_id = str(col-1)+"-"+str(row-ord('A')) # 0-0, 0-1... internal identifier
position_text = str(col)+"-"+chr(row) # 1-A, 1-B, 1-C... user-friendly identifier
vertical_header_labels.append(position_text)
self.table_items[position_id] = QtGui.QTableWidgetItem()
self.table_items[position_id].setTextAlignment(QtCore.Qt.AlignLeft+QtCore.Qt.AlignVCenter)
self.table.setItem(idx, 0, self.table_items[position_id])
self.table.setVerticalHeaderLabels(vertical_header_labels)
self.table.move(600, 20)
#self.table.setMinimumHeight(990)
self.table.setMinimumHeight(700)
self.table.setMinimumWidth(500)
def _fill_sample_table(self, samples):
for s in samples:
print("Sample: ", s)
position_id = str(s["position"]["y"]-1)+"-"+str(s["position"]["x"]-1)
sample_name = s["name"]
self.table_items[position_id].setText(sample_name)
def _update_screen_with_plate_info(self, plate):
self.currentPlate.setText(plate["name"])
self._fill_sample_table(plate["content"])
def create_sample_docking(self):
font = QtGui.QFont()
font.setBold(True)
font.setPointSize(20)
lbl = QtGui.QLabel(self)
lbl.move(20, 20+self.plate.size[1]+50)
lbl.setFont(font)
lbl.setText("Sample Docking Station")
position_x = lbl.pos().x()
position_y = lbl.pos().y()
for i in range(0, 5):
self.plate_docking.append(self._create_plate_docking(i, position_x, position_y+50*(i+1)))
def _create_plate_docking(self, idx, pos_x, pos_y):
font = QtGui.QFont()
font.setBold(True)
font.setPointSize(20)
lbl = QtGui.QLabel(self)
lbl.move(pos_x, pos_y)
lbl.setText(str(idx+1))
lbl.setFont(font)
DOCKING_EMPTY = "background-color: #FAFAFA; border: 2px dashed #484848; " # border-radius: 15px;"
DOCKING_MEASURING = "background-color: #58FAAC; border: 2px solid #484848; " # border-radius: 15px;"
DOCKING_SAVE_PENDING = "background-color: #F2F5A9; border: 2px solid #484848; " # border-radius: 15px;"
DOCKING_NORMAL = "background-color:#6E6E6E; border: 2px solid #484848; "
style = [DOCKING_MEASURING, DOCKING_NORMAL, DOCKING_SAVE_PENDING, DOCKING_EMPTY, DOCKING_EMPTY]
lbl_plate = QtGui.QLabel(self)
lbl_plate.setStyleSheet(style[idx])
lbl_plate.setMinimumSize(300, 40)
lbl_plate.move(pos_x+20, pos_y-10)
btn_add = QtGui.QPushButton(self)
#btn_add.move(pos_x+320, pos_y-8)
btn_add.move(pos_x+330, pos_y-18)
btn_add.setMinimumSize(40, 40)
btn_add.connect(btn_add, QtCore.SIGNAL('clicked()'), partial(self._handle_add_dock_click, idx))
btn_add.setIcon(QtGui.QIcon(icons.ADD))
btn_add_hint = "Add a new plate to the docking station #"+str(idx+1)
btn_add.setStatusTip(btn_add_hint)
btn_load = QtGui.QPushButton(self)
#btn_load.move(pos_x+375, pos_y-8)
btn_load.move(pos_x+405, pos_y-18)
btn_load.setMinimumSize(40, 40)
btn_load.connect(btn_load, QtCore.SIGNAL('clicked()'), partial(self._handle_load_dock_click, idx))
btn_load.setIcon(QtGui.QIcon(icons.FIND))
btn_load_hint = "Load a existing plate to the docking station #"+str(idx+1)
btn_load.setStatusTip(btn_load_hint)
btn_import = QtGui.QPushButton(self)
#btn_import.move(pos_x+430, pos_y-8)
btn_import.move(pos_x+480, pos_y-18)
btn_import.setMinimumSize(40, 40)
btn_import.connect(btn_import, QtCore.SIGNAL('clicked()'), partial(self._handle_import_dock_click, idx))
btn_import.setIcon(QtGui.QIcon(icons.IMPORT))
btn_import_hint = "Import a new plate to the docking station #"+str(idx+1)
btn_import.setStatusTip(btn_import_hint)
return lbl_plate
def _handle_add_dock_click(self, idx):
# TODO: Finish method implementation
print("Adding new plate to Dock Station #", idx)
def _handle_load_dock_click(self, idx):
# TODO: Finish method implementation
print("Loading existing plate to Dock Station #", idx)
barcode, ok = QtGui.QInputDialog.getText(self, 'Loading plate', 'Enter your plate barcode:')
if ok:
barcode = barcode.zfill(13)
plate_info = db_sample.find_plate_by_barcode(state_general.owner, state_general.project, state_general.beamline_id, barcode, fill=True)
if plate_info is None:
QtGui.QMessageBox.critical(self, "Not Found", "Plate not found with barcode: {}!".format(barcode))
else:
self._update_screen_with_plate_info(plate_info)
def _handle_import_dock_click(self, idx):
# TODO: Finish method implementation
print("Importing new plate to Dock Station #", idx)
fname = QtGui.QFileDialog.getOpenFileName(self, 'Select File to import', '~')
if fname != "":
plate_info = db_sample.import_plate_from_excel(fname, state_general.owner, state_general.project, state_general.beamline_id, "96wp")
self._update_screen_with_plate_info(plate_info)
def well_clicked(self, selected_items):
scroll = True
for item_name, item in self.table_items.items():
item.setSelected(False)
for item in selected_items:
table_item = self.table_items[item[0]+"-"+item[1]]
table_item.setSelected(True)
if scroll:
self.table.scrollToItem(table_item)
scroll = False
if self.filter_sample_table:
for item_name, item in self.table_items.items():
if len(selected_items) > 0:
self.table.setRowHidden(item.row(), not item.isSelected())
else:
self.table.setRowHidden(item.row(), False)
class WindowlessSetup(QtGui.QWidget):
def __init__(self):
super(WindowlessSetup, self).__init__()
self.filter_sample_table = True
self.currentPlate = None
self.plate = None
self.table = None
self.table_items = OrderedDict()
self.plate_docking = []
self.init_ui()
def init_ui(self):
font = QtGui.QFont()
font.setBold(True)
# font.setPointSize(20)
lbl = QtGui.QLabel(self)
lbl.move(20, 0)
lbl.setFont(font)
lbl.setText("Current Plate:")
self.currentPlate = QtGui.QLabel(self)
self.currentPlate.move(110, 0)
self.currentPlate.setText("Select or Create a Plate")
self.create_plate()
self.create_table()
self.create_sample_docking()
def create_plate(self):
self.plate = Plate(self)
self.plate.move(20, 20)
self.plate.clicked_callback(self.well_clicked)
def create_table(self):
font = QtGui.QFont()
font.setPointSize(20)
self.table = QtGui.QTableWidget(self)
self.table.setFont(font)
self.table.setColumnCount(1) # Sample Name
self.table.setColumnWidth(0, 400)
self.table.setRowCount(96) # 96 wells plate
self.table.setHorizontalHeaderLabels(['Sample'])
vertical_header_labels = []
for col in range(1, 13): # From 1 to 12
for row in range(ord('A'), ord('I')): # From A to H
idx = (row - ord('A')) + (col - 1) * (ord('I') - ord('A'))
position_id = str(col - 1) + "-" + str(
row - ord('A')) # 0-0, 0-1... internal identifier
position_text = str(col) + "-" + chr(
row) # 1-A, 1-B, 1-C... user-friendly identifier
vertical_header_labels.append(position_text)
self.table_items[position_id] = QtGui.QTableWidgetItem()
self.table_items[position_id].setTextAlignment(
QtCore.Qt.AlignLeft + QtCore.Qt.AlignVCenter)
self.table.setItem(idx, 0, self.table_items[position_id])
self.table.setVerticalHeaderLabels(vertical_header_labels)
self.table.move(600, 20)
#self.table.setMinimumHeight(990)
self.table.setMinimumHeight(700)
self.table.setMinimumWidth(500)
def _fill_sample_table(self, samples):
for s in samples:
print("Sample: ", s)
position_id = str(s["position"]["y"] -
1) + "-" + str(s["position"]["x"] - 1)
sample_name = s["name"]
self.table_items[position_id].setText(sample_name)
def _update_screen_with_plate_info(self, plate):
self.currentPlate.setText(plate["name"])
self._fill_sample_table(plate["content"])
def create_sample_docking(self):
font = QtGui.QFont()
font.setBold(True)
font.setPointSize(20)
lbl = QtGui.QLabel(self)
lbl.move(20, 20 + self.plate.size[1] + 50)
lbl.setFont(font)
lbl.setText("Sample Docking Station")
position_x = lbl.pos().x()
position_y = lbl.pos().y()
for i in range(0, 5):
self.plate_docking.append(
self._create_plate_docking(i, position_x,
position_y + 50 * (i + 1)))
def _create_plate_docking(self, idx, pos_x, pos_y):
font = QtGui.QFont()
font.setBold(True)
font.setPointSize(20)
lbl = QtGui.QLabel(self)
lbl.move(pos_x, pos_y)
lbl.setText(str(idx + 1))
lbl.setFont(font)
DOCKING_EMPTY = "background-color: #FAFAFA; border: 2px dashed #484848; " # border-radius: 15px;"
DOCKING_MEASURING = "background-color: #58FAAC; border: 2px solid #484848; " # border-radius: 15px;"
DOCKING_SAVE_PENDING = "background-color: #F2F5A9; border: 2px solid #484848; " # border-radius: 15px;"
DOCKING_NORMAL = "background-color:#6E6E6E; border: 2px solid #484848; "
style = [
DOCKING_MEASURING, DOCKING_NORMAL, DOCKING_SAVE_PENDING,
DOCKING_EMPTY, DOCKING_EMPTY
]
lbl_plate = QtGui.QLabel(self)
lbl_plate.setStyleSheet(style[idx])
lbl_plate.setMinimumSize(300, 40)
lbl_plate.move(pos_x + 20, pos_y - 10)
btn_add = QtGui.QPushButton(self)
#btn_add.move(pos_x+320, pos_y-8)
btn_add.move(pos_x + 330, pos_y - 18)
btn_add.setMinimumSize(40, 40)
btn_add.connect(btn_add, QtCore.SIGNAL('clicked()'),
partial(self._handle_add_dock_click, idx))
btn_add.setIcon(QtGui.QIcon(icons.ADD))
btn_add_hint = "Add a new plate to the docking station #" + str(idx +
1)
btn_add.setStatusTip(btn_add_hint)
btn_load = QtGui.QPushButton(self)
#btn_load.move(pos_x+375, pos_y-8)
btn_load.move(pos_x + 405, pos_y - 18)
btn_load.setMinimumSize(40, 40)
btn_load.connect(btn_load, QtCore.SIGNAL('clicked()'),
partial(self._handle_load_dock_click, idx))
btn_load.setIcon(QtGui.QIcon(icons.FIND))
btn_load_hint = "Load a existing plate to the docking station #" + str(
idx + 1)
btn_load.setStatusTip(btn_load_hint)
btn_import = QtGui.QPushButton(self)
#btn_import.move(pos_x+430, pos_y-8)
btn_import.move(pos_x + 480, pos_y - 18)
btn_import.setMinimumSize(40, 40)
btn_import.connect(btn_import, QtCore.SIGNAL('clicked()'),
partial(self._handle_import_dock_click, idx))
btn_import.setIcon(QtGui.QIcon(icons.IMPORT))
btn_import_hint = "Import a new plate to the docking station #" + str(
idx + 1)
btn_import.setStatusTip(btn_import_hint)
return lbl_plate
def _handle_add_dock_click(self, idx):
# TODO: Finish method implementation
print("Adding new plate to Dock Station #", idx)
def _handle_load_dock_click(self, idx):
# TODO: Finish method implementation
print("Loading existing plate to Dock Station #", idx)
barcode, ok = QtGui.QInputDialog.getText(self, 'Loading plate',
'Enter your plate barcode:')
if ok:
barcode = barcode.zfill(13)
plate_info = db_sample.find_plate_by_barcode(
state_general.owner,
state_general.proposal_id,
state_general.beamline_id,
barcode,
fill=True)
if plate_info is None:
QtGui.QMessageBox.critical(
self, "Not Found",
"Plate not found with barcode: {}!".format(barcode))
else:
self._update_screen_with_plate_info(plate_info)
def _handle_import_dock_click(self, idx):
# TODO: Finish method implementation
print("Importing new plate to Dock Station #", idx)
fname = QtGui.QFileDialog.getOpenFileName(self,
'Select File to import', '~')
if fname != "":
plate_info = db_sample.import_plate_from_excel(
fname, state_general.owner, state_general.proposal_id,
state_general.beamline_id, "96wp")
self._update_screen_with_plate_info(plate_info)
def well_clicked(self, selected_items):
scroll = True
for item_name, item in self.table_items.items():
item.setSelected(False)
for item in selected_items:
table_item = self.table_items[item[0] + "-" + item[1]]
table_item.setSelected(True)
if scroll:
self.table.scrollToItem(table_item)
scroll = False
if self.filter_sample_table:
for item_name, item in self.table_items.items():
if len(selected_items) > 0:
self.table.setRowHidden(item.row(), not item.isSelected())
else:
self.table.setRowHidden(item.row(), False)
