def make_fujitsu_rules(self):
"""Create Fujitsu rules (clang variant) unless supplied upstream.
Implemented for 1906 and later (older rules are too messy to edit).
Already included after 1912.
"""
general_rules = 'wmake/rules/General'
arch_rules = 'wmake/rules/linuxARM64' # self.arch
src = arch_rules + 'Clang'
dst = arch_rules + 'Fujitsu' # self.compiler
if os.path.exists(dst):
return
# Handle rules/<ARCH><COMP> or rules/<ARCH>/<COMP>
if not os.path.exists(src):
src = join_path(arch_rules, 'Clang')
dst = join_path(arch_rules, 'Fujitsu') # self.compiler
if os.path.exists(dst):
return
tty.info('Add Fujitsu wmake rules')
copy_tree(src, dst)
for cfg in ['c', 'c++', 'general']:
rule = join_path(dst, cfg)
filter_file('Clang', 'Fujitsu', rule, backup=False)
src = join_path(general_rules, 'Clang')
dst = join_path(general_rules, 'Fujitsu') # self.compiler
copy_tree(src, dst)
filter_file('clang', spack_cc, join_path(dst, 'c'),
backup=False, string=True)
filter_file('clang++', spack_cxx, join_path(dst, 'c++'),
backup=False, string=True)
def patch(self):
"""Copy additional files or other patching."""
add_extra_files(self, self.common, self.assets)
# Emit openfoam version immediately, if we resolved the wrong version
# it takes a very long time to rebuild!
tty.info('Build for ' + self.spec['openfoam'].format(
'{name}{@version}{%compiler}{compiler_flags}{variants}'))
def _add_to_root_stage(self):
"""
Move the extracted resource to the root stage (according to placement).
"""
root_stage = self.root_stage
resource = self.resource
placement = os.path.basename(self.source_path) \
if resource.placement is None \
else resource.placement
if not isinstance(placement, dict):
placement = {'': placement}
target_path = join_path(root_stage.source_path, resource.destination)
try:
os.makedirs(target_path)
except OSError as err:
if err.errno == errno.EEXIST and os.path.isdir(target_path):
pass
else:
raise
for key, value in iteritems(placement):
destination_path = join_path(target_path, value)
source_path = join_path(self.source_path, key)
if not os.path.exists(destination_path):
tty.info('Moving resource stage\n\tsource : '
'{stage}\n\tdestination : {destination}'.format(
stage=source_path, destination=destination_path))
shutil.move(os.path.realpath(source_path), destination_path)
def test(self):
"""Perform stand-alone checks on the installed package."""
if self.spec.satisfies('@:1') or \
not os.path.isdir(self.prefix.bin):
tty.info('Skipping: checks not installed in bin for v{0}'.format(
self.version))
return
# Run a subset of examples PROVIDED installed
# tutorials with readily checkable outputs.
checks = {
'malloc': ['99 should be 99'],
'recipe_dynamic_pool_heuristic': ['in the pool', 'releas'],
'recipe_no_introspection': ['has allocated', 'used'],
'strategy_example': ['Available allocators', 'HOST'],
'tut_copy': ['Copied source data'],
'tut_introspection':
['Allocator used is HOST', 'size of the allocation'],
'tut_memset': ['Set data from HOST'],
'tut_move': ['Moved source data', 'HOST'],
'tut_reallocate': ['Reallocated data'],
'vector_allocator': [''],
}
for exe in checks:
expected = checks[exe]
reason = 'test: checking output from {0}'.format(exe)
self.run_test(exe, [],
expected,
0,
installed=False,
purpose=reason,
skip_missing=True,
work_dir=self.prefix.bin)
def link_one(spec, path, link=os.symlink, verbose=False):
'Link all files in `spec` into directory `path`.'
dotspack = transform_path(spec, '.spack', path)
if os.path.exists(dotspack):
tty.warn('Skipping existing package: "%s"' % spec.name)
return
if verbose:
tty.info('Linking package: "%s"' % spec.name)
for dirpath, dirnames, filenames in os.walk(spec.prefix):
if not filenames:
continue # avoid explicitly making empty dirs
targdir = transform_path(spec, dirpath, path)
assuredir(targdir)
for fname in filenames:
src = os.path.join(dirpath, fname)
dst = os.path.join(targdir, fname)
if os.path.exists(dst):
if '.spack' in dst.split(os.path.sep):
continue # silence these
tty.warn("Skipping existing file: %s" % dst)
continue
link(src, dst)
def expand_archive(self):
super(ResourceStage, self).expand_archive()
root_stage = self.root_stage
resource = self.resource
placement = os.path.basename(self.source_path) \
if resource.placement is None \
else resource.placement
if not isinstance(placement, dict):
placement = {'': placement}
# Make the paths in the dictionary absolute and link
for key, value in iteritems(placement):
target_path = join_path(
root_stage.source_path, resource.destination)
destination_path = join_path(target_path, value)
source_path = join_path(self.source_path, key)
try:
os.makedirs(target_path)
except OSError as err:
if err.errno == errno.EEXIST and os.path.isdir(target_path):
pass
else:
raise
if not os.path.exists(destination_path):
# Create a symlink
tty.info('Moving resource stage\n\tsource : '
'{stage}\n\tdestination : {destination}'.format(
stage=source_path, destination=destination_path
))
shutil.move(source_path, destination_path)
def _run_example_checks(self):
"""Run the example smoke test checks."""
tty.info('Running example checks')
dirs = []
if self.spec.satisfies('@0.1.3:0.3.1'):
dirs.append(self._extra_tests_path)
elif self.spec.satisfies('@0.3.3:1.0.1'):
dirs.append(join_path(self._extra_tests_path, 'examples'))
elif self.spec.satisfies('@1.1.0'):
dirs.append(join_path(self.prefix.bin, 'examples'))
elif self.spec.satisfies('@2.0.0:'):
dirs.append(self.prefix.bin)
# Check the results from a subset of the (potentially) available
# executables
checks = {
# Versions 0.1.3:0.3.1 (spack-build/bin)
# Versions 0.3.3:1.0.1 (spack-build/bin/examples)
# Versions 2.0.0:2.1.0 (spack-build/bin)
# Version 1.1.0 (prefix.bin/examples)
# Versions 2.0.0:2.1.0 (prefix.bin)
'malloc': (['99 should be 99'], 0),
'strategy_example': (['Available allocators', 'HOST'], 0),
'vector_allocator': ([''], 0),
}
self._run_checks(dirs, checks)
def try_search_path(self, executables, abstract_spec_str):
info = {}
if _executables_in_store(executables,
abstract_spec_str,
query_info=info):
self.last_search = info
return True
tty.info("Bootstrapping {0} from sources".format(abstract_spec_str))
# If we compile code from sources detecting a few build tools
# might reduce compilation time by a fair amount
_add_externals_if_missing()
concrete_spec = spack.spec.Spec(abstract_spec_str)
if concrete_spec.name == 'patchelf':
concrete_spec._old_concretize(deprecation_warning=False)
else:
concrete_spec.concretize()
msg = "[BOOTSTRAP] Try installing '{0}' from sources"
tty.debug(msg.format(abstract_spec_str))
with spack.config.override(self.mirror_scope):
concrete_spec.package.do_install()
if _executables_in_store(executables, concrete_spec, query_info=info):
self.last_search = info
return True
return False
def try_import(module, abstract_spec_str):
if _try_import_from_store(module, abstract_spec_str):
return True
# Try to build and install from sources
with spack_python_interpreter():
# Add hint to use frontend operating system on Cray
if str(spack.architecture.platform()) == 'cray':
abstract_spec_str += ' os=fe'
concrete_spec = spack.spec.Spec(abstract_spec_str + ' ^' +
spec_for_current_python())
if module == 'clingo':
# TODO: remove when the old concretizer is deprecated
concrete_spec._old_concretize()
else:
concrete_spec.concretize()
msg = "[BOOTSTRAP MODULE {0}] Try installing '{1}' from sources"
tty.debug(msg.format(module, abstract_spec_str))
tty.info("Bootstrapping {0} from sources".format(module))
# Install the spec that should make the module importable
concrete_spec.package.do_install()
return _try_import_from_store(module,
abstract_spec_str=abstract_spec_str)
def save_result(self, result, overwrite=False):
"""
Read saved ABI results and upload to monitor server.
ABI results are saved to individual files, so each one needs to be
read and uploaded. Result here should be the lookup generated in run(),
the key is the analyzer name, and each value is the result file.
We currently upload the entire xml as text because libabigail can't
easily read gzipped xml, but this will be updated when it can.
"""
if not spack.monitor.cli:
return
name = self.spec.package.name
for obj, filename in result.get(self.name, {}).items():
# Don't include the prefix
rel_path = obj.replace(self.spec.prefix + os.path.sep, "")
# We've already saved the results to file during run
content = spack.monitor.read_file(filename)
# A result needs an analyzer, value or binary_value, and name
data = {
"value": content,
"install_file": rel_path,
"name": "abidw-xml"
}
tty.info("Sending result for %s %s to monitor." % (name, rel_path))
spack.hooks.on_analyzer_save(self.spec.package,
{"libabigail": [data]})
def save_result(self, result, overwrite=False):
"""
Save a result to the associated spack monitor, if defined.
This function is on the level of the analyzer because it might be
the case that the result is large (appropriate for a single request)
or that the data is organized differently (e.g., more than one
request per result). If an analyzer subclass needs to over-write
this function with a custom save, that is appropriate to do (see abi).
"""
# We maintain the structure in json with the analyzer as key so
# that in the future, we could upload to a monitor server
if result[self.name]:
outfile = os.path.join(self.output_dir, self.outfile)
# Only try to create the results directory if we have a result
if not os.path.exists(self._output_dir):
os.makedirs(self._output_dir)
# Don't overwrite an existing result if overwrite is False
if os.path.exists(outfile) and not overwrite:
tty.info("%s exists and overwrite is False, skipping." %
outfile)
else:
tty.info("Writing result to %s" % outfile)
spack.monitor.write_json(result[self.name], outfile)
# This hook runs after a save result
spack.hooks.on_analyzer_save(self.spec.package, result)
def link_one(spec, path, link=os.symlink, verbose=False):
'Link all files in `spec` into directory `path`.'
dotspack = transform_path(spec, '.spack', path)
if os.path.exists(dotspack):
tty.warn('Skipping existing package: "%s"' % spec.name)
return
if verbose:
tty.info('Linking package: "%s"' % spec.name)
for dirpath, dirnames, filenames in os.walk(spec.prefix):
if not filenames:
continue # avoid explicitly making empty dirs
targdir = transform_path(spec, dirpath, path)
assuredir(targdir)
for fname in filenames:
src = os.path.join(dirpath, fname)
dst = os.path.join(targdir, fname)
if os.path.exists(dst):
if '.spack' in dst.split(os.path.sep):
continue # silence these
tty.warn("Skipping existing file: %s" % dst)
continue
link(src, dst)
def test(self):
if not self.spec.satisfies('@develop') or \
not os.path.isdir(self.prefix.bin):
tty.info('Skipping: checks not installed in bin for v{0}'.
format(self.version))
return
tests = [
['NlpMdsEx1.exe', '400', '100', '0', '-selfcheck'],
['NlpMdsEx1.exe', '400', '100', '1', '-selfcheck'],
['NlpMdsEx1.exe', '400', '100', '0', '-empty_sp_row', '-selfcheck'],
]
if '+raja' in self.spec:
tests.extend([
['NlpMdsEx1Raja.exe', '400', '100', '0', '-selfcheck'],
['NlpMdsEx1Raja.exe', '400', '100', '1', '-selfcheck'],
['NlpMdsEx1Raja.exe', '400', '100', '0', '-empty_sp_row', '-selfcheck'],
])
for i, test in enumerate(tests):
exe = os.path.join(self.prefix.bin, test[0])
args = test[1:]
reason = 'test {0}: "{1}"'.format(i, ' '.join(test))
self.run_test(exe, args, [], 0, installed=False,
purpose=reason, skip_missing=True,
work_dir=self.prefix.bin)
def expand_archive(self):
super(ResourceStage, self).expand_archive()
root_stage = self.root_stage
resource = self.resource
placement = os.path.basename(
self.source_path
) if resource.placement is None else resource.placement
if not isinstance(placement, dict):
placement = {'': placement}
# Make the paths in the dictionary absolute and link
for key, value in placement.iteritems():
target_path = join_path(root_stage.source_path,
resource.destination)
destination_path = join_path(target_path, value)
source_path = join_path(self.source_path, key)
try:
os.makedirs(target_path)
except OSError as err:
if err.errno == errno.EEXIST and os.path.isdir(target_path):
pass
else:
raise
if not os.path.exists(destination_path):
# Create a symlink
tty.info(
'Moving resource stage\n\tsource : {stage}\n\tdestination : {destination}'
.format(stage=source_path, destination=destination_path))
shutil.move(source_path, destination_path)
def try_import(module, abstract_spec_str):
if _try_import_from_store(module, abstract_spec_str):
return True
tty.info("Bootstrapping {0} from sources".format(module))
# If we compile code from sources detecting a few build tools
# might reduce compilation time by a fair amount
_add_externals_if_missing()
# Try to build and install from sources
with spack_python_interpreter():
# Add hint to use frontend operating system on Cray
if str(spack.platforms.host()) == 'cray':
abstract_spec_str += ' os=fe'
concrete_spec = spack.spec.Spec(abstract_spec_str + ' ^' +
spec_for_current_python())
if module == 'clingo':
# TODO: remove when the old concretizer is deprecated
concrete_spec._old_concretize(deprecation_warning=False)
else:
concrete_spec.concretize()
msg = "[BOOTSTRAP MODULE {0}] Try installing '{1}' from sources"
tty.debug(msg.format(module, abstract_spec_str))
# Install the spec that should make the module importable
concrete_spec.package.do_install(fail_fast=True)
return _try_import_from_store(module,
abstract_spec_str=abstract_spec_str)
def _add_to_root_stage(self):
"""
Move the extracted resource to the root stage (according to placement).
"""
root_stage = self.root_stage
resource = self.resource
placement = os.path.basename(self.source_path) \
if resource.placement is None \
else resource.placement
if not isinstance(placement, dict):
placement = {'': placement}
target_path = os.path.join(
root_stage.source_path, resource.destination)
try:
os.makedirs(target_path)
except OSError as err:
if err.errno == errno.EEXIST and os.path.isdir(target_path):
pass
else:
raise
for key, value in iteritems(placement):
destination_path = os.path.join(target_path, value)
source_path = os.path.join(self.source_path, key)
if not os.path.exists(destination_path):
tty.info('Moving resource stage\n\tsource : '
'{stage}\n\tdestination : {destination}'.format(
stage=source_path, destination=destination_path
))
shutil.move(os.path.realpath(source_path), destination_path)
def _run_tut_checks(self):
"""Run the tutorial smoke test checks."""
tty.info('Running tutorials checks')
dirs = []
tut_subdir = join_path('examples', 'tutorial')
if self.spec.satisfies('@0.2.4:0.3.1'):
dirs.append(self._extra_tests_path)
elif self.spec.satisfies('@0.3.3:1.0.1'):
dirs.append(join_path(self._extra_tests_path, tut_subdir))
elif self.spec.satisfies('@1.1.0'):
dirs.append(join_path(self.prefix.bin, tut_subdir))
elif self.spec.satisfies('@2.0.0:'):
dirs.append(self.prefix.bin)
checks = {
# Versions 0.2.4:0.3.1 (spack-build/bin)
# Versions 0.3.3:1.0.1 (spack-build/bin/examples/tutorial)
# Versions 2.0.0:2.1.0 (spack-build/bin)
# Version 1.1.0 (prefix.bin/examples/tutorial)
# Versions 2.0.0:2.1.0 (prefix.bin)
'tut_copy': (['Copied source data'], 0),
'tut_introspection':
(['Allocator used is HOST', 'size of the allocation'], 0),
'tut_memset': (['Set data from HOST'], 0),
'tut_move': (['Moved source data', 'HOST'], 0),
'tut_reallocate': (['Reallocated data'], 0),
}
self._run_checks(dirs, checks)
def patch(self):
"""Adjust OpenFOAM build for spack.
Where needed, apply filter as an alternative to normal patching."""
add_extra_files(self, self.common, self.assets)
# Prior to 1812, required OpenFOAM-v{VER} directory when sourcing
projdir = "OpenFOAM-v{0}".format(self.version)
if not os.path.exists(join_path(self.stage.path, projdir)):
tty.info('Added directory link {0}'.format(projdir))
os.symlink(
os.path.relpath(self.stage.source_path, self.stage.path),
join_path(self.stage.path, projdir))
# Avoid WM_PROJECT_INST_DIR for ThirdParty
# This modification is non-critical
edits = {
'WM_THIRD_PARTY_DIR':
r'$WM_PROJECT_DIR/ThirdParty #SPACK: No separate third-party',
}
rewrite_environ_files( # etc/{bashrc,cshrc}
edits,
posix=join_path('etc', 'bashrc'),
cshell=join_path('etc', 'cshrc'))
# The following filtering is non-critical.
# It simply prevents 'site' dirs at the wrong level
# (likely non-existent anyhow) from being added to
# PATH, LD_LIBRARY_PATH.
for rcdir in ['config.sh', 'config.csh']:
rcfile = join_path('etc', rcdir, 'settings')
if os.path.isfile(rcfile):
filter_file('WM_PROJECT_INST_DIR/',
'WM_PROJECT_DIR/',
rcfile,
backup=False)
def view(parser, args):
'Produce a view of a set of packages.'
specs = spack.cmd.parse_specs(args.specs)
path = args.path[0]
view = YamlFilesystemView(
path, spack.store.layout,
ignore_conflicts=getattr(args, "ignore_conflicts", False),
link=os.link if args.action in ["hardlink", "hard"]
else os.symlink,
verbose=args.verbose)
# Process common args and specs
if getattr(args, "all", False):
specs = view.get_all_specs()
if len(specs) == 0:
tty.warn("Found no specs in %s" % path)
elif args.action in actions_link:
# only link commands need to disambiguate specs
specs = [spack.cmd.disambiguate_spec(s) for s in specs]
elif args.action in actions_status:
# no specs implies all
if len(specs) == 0:
specs = view.get_all_specs()
else:
specs = relaxed_disambiguate(specs, view)
else:
# status and remove can map the name to packages in view
specs = relaxed_disambiguate(specs, view)
with_dependencies = args.dependencies.lower() in ['true', 'yes']
# Map action to corresponding functionality
if args.action in actions_link:
try:
view.add_specs(*specs,
with_dependencies=with_dependencies,
exclude=args.exclude)
except MergeConflictError:
tty.info("Some file blocked the merge, adding the '-i' flag will "
"ignore this conflict. For more information see e.g. "
"https://github.com/spack/spack/issues/9029")
raise
elif args.action in actions_remove:
view.remove_specs(*specs,
with_dependencies=with_dependencies,
exclude=args.exclude,
with_dependents=not args.no_remove_dependents)
elif args.action in actions_status:
view.print_status(*specs, with_dependencies=with_dependencies)
else:
tty.error('Unknown action: "%s"' % args.action)
def check_install(self):
spec = self.spec
test_env = {}
# Make sure the correct config is found
test_env["BH_CONFIG"] = self.config_file
# Remove the lib/spackenv directory from the PATH variable when
# executing the tests, becauses it messes with the JIT compilation
# inside Bohrium
paths = os.environ['PATH'].split(':')
paths = [p for p in paths if "spack/env" not in p]
test_env["PATH"] = ":".join(paths)
# Add the PYTHONPATH to bohrium to the PYTHONPATH environment
pythonpaths = [p for p in os.environ["PYTHONPATH"].split(":")]
pythonpaths.append(
join_path(self.prefix, spec['python'].package.site_packages_dir))
test_env["PYTHONPATH"] = ":".join(pythonpaths)
# Collect the stacks which should be available:
stacks = ["default"]
if "+openmp" in spec:
stacks.append("openmp")
if "+cuda" in spec:
stacks.append("cuda")
if "+opencl" in spec:
stacks.append("opencl")
# C++ compiler and compiler flags
cxx = Executable(self.compiler.cxx)
cxx_flags = [
"-I", self.prefix.include, "-I", self.prefix.include.bohrium, "-L",
self.prefix.lib, "-lbh", "-lbhxx"
]
# Compile C++ test program
file_cxxadd = join_path(os.path.dirname(self.module.__file__),
"cxxadd.cpp")
cxx("-o", "test_cxxadd", file_cxxadd, *cxx_flags)
test_cxxadd = Executable("./test_cxxadd")
# Build python test commandline
file_pyadd = join_path(os.path.dirname(self.module.__file__),
"pyadd.py")
test_pyadd = Executable(spec['python'].command.path + " " + file_pyadd)
# Run tests for each available stack
for bh_stack in stacks:
tty.info("Testing with bohrium stack '" + bh_stack + "'")
test_env["BH_STACK"] = bh_stack
cpp_output = test_cxxadd(output=str, env=test_env)
compare_output(cpp_output, "Success!\n")
# Python test (if +python)
if "+python" in spec:
py_output = test_pyadd(output=str, env=test_env)
compare_output(py_output, "Success!\n")
def view(parser, args):
'Produce a view of a set of packages.'
specs = spack.cmd.parse_specs(args.specs)
path = args.path[0]
view = YamlFilesystemView(
path, spack.store.layout,
ignore_conflicts=getattr(args, "ignore_conflicts", False),
link=os.link if args.action in ["hardlink", "hard"]
else os.symlink,
verbose=args.verbose)
# Process common args and specs
if getattr(args, "all", False):
specs = view.get_all_specs()
if len(specs) == 0:
tty.warn("Found no specs in %s" % path)
elif args.action in actions_link:
# only link commands need to disambiguate specs
specs = [spack.cmd.disambiguate_spec(s) for s in specs]
elif args.action in actions_status:
# no specs implies all
if len(specs) == 0:
specs = view.get_all_specs()
else:
specs = relaxed_disambiguate(specs, view)
else:
# status and remove can map the name to packages in view
specs = relaxed_disambiguate(specs, view)
with_dependencies = args.dependencies.lower() in ['true', 'yes']
# Map action to corresponding functionality
if args.action in actions_link:
try:
view.add_specs(*specs,
with_dependencies=with_dependencies,
exclude=args.exclude)
except MergeConflictError:
tty.info("Some file blocked the merge, adding the '-i' flag will "
"ignore this conflict. For more information see e.g. "
"https://github.com/spack/spack/issues/9029")
raise
elif args.action in actions_remove:
view.remove_specs(*specs,
with_dependencies=with_dependencies,
exclude=args.exclude,
with_dependents=not args.no_remove_dependents)
elif args.action in actions_status:
view.print_status(*specs, with_dependencies=with_dependencies)
else:
tty.error('Unknown action: "%s"' % args.action)
def tutorial(parser, args):
if args.action == "basic":
tty.info("Setting up Modulecmd.py's basic mock tutorial MODULEPATH")
pymod.tutorial.basic_usage()
elif args.action == "teardown":
tty.info("Removing Modulecmd.py's mock tutorial MODULEPATH")
pymod.tutorial.teardown()
pymod.mc.dump()
def install_tree(src, dest, **kwargs):
"""Manually install a file to a particular location."""
tty.info("Installing %s to %s" % (src, dest))
shutil.copytree(src, dest, **kwargs)
for s, d in traverse_tree(src, dest, follow_nonexisting=False):
set_install_permissions(d)
copy_mode(s, d)
def install_tree(src, dest, **kwargs):
"""Manually install a file to a particular location."""
tty.info("Installing %s to %s" % (src, dest))
shutil.copytree(src, dest, **kwargs)
for s, d in traverse_tree(src, dest, follow_nonexisting=False):
set_install_permissions(d)
copy_mode(s, d)
def check_one(spec, path, verbose=False):
'Check status of view in path against spec'
dotspack = os.path.join(path, '.spack', spec.name)
if os.path.exists(os.path.join(dotspack)):
tty.info('Package in view: "%s"' % spec.name)
return
tty.info('Package not in view: "%s"' % spec.name)
return
def iter_read(self, pattern):
"""
A helper to read json from a directory glob and return it loaded.
"""
for filename in glob(pattern):
basename = os.path.basename(filename)
tty.info("Reading %s" % basename)
yield read_json(filename)
def check_one(spec, path, verbose=False):
'Check status of view in path against spec'
dotspack = os.path.join(path, '.spack', spec.name)
if os.path.exists(os.path.join(dotspack)):
tty.info('Package in view: "%s"' % spec.name)
return
tty.info('Package not in view: "%s"' % spec.name)
return
def setup_minimal_environment(self, env):
"""Sets a minimal openfoam environment.
"""
tty.info('OpenFOAM minimal env {0}'.format(self.prefix))
env.set('FOAM_PROJECT_DIR', self.projectdir)
env.set('WM_PROJECT_DIR', self.projectdir)
for d in ['wmake', self.archbin]: # bin added automatically
env.prepend_path('PATH', join_path(self.projectdir, d))
def check_install(self):
spec = self.spec
test_env = {}
# Make sure the correct config is found
test_env["BH_CONFIG"] = self.config_file
# Remove the lib/spackenv directory from the PATH variable when
# executing the tests, becauses it messes with the JIT compilation
# inside Bohrium
paths = os.environ['PATH'].split(':')
paths = [p for p in paths if "spack/env" not in p]
test_env["PATH"] = ":".join(paths)
# Add the PYTHONPATH to bohrium to the PYTHONPATH environment
pythonpaths = [p for p in os.environ["PYTHONPATH"].split(":")]
pythonpaths.append(join_path(self.prefix,
spec['python'].package.site_packages_dir))
test_env["PYTHONPATH"] = ":".join(pythonpaths)
# Collect the stacks which should be available:
stacks = ["default"]
if "+openmp" in spec:
stacks.append("openmp")
if "+cuda" in spec:
stacks.append("cuda")
if "+opencl" in spec:
stacks.append("opencl")
# C++ compiler and compiler flags
cxx = Executable(self.compiler.cxx)
cxx_flags = ["-I", self.prefix.include,
"-I", self.prefix.include.bohrium,
"-L", self.prefix.lib, "-lbh", "-lbhxx"]
# Compile C++ test program
file_cxxadd = join_path(os.path.dirname(self.module.__file__),
"cxxadd.cpp")
cxx("-o", "test_cxxadd", file_cxxadd, *cxx_flags)
test_cxxadd = Executable("./test_cxxadd")
# Build python test commandline
file_pyadd = join_path(os.path.dirname(self.module.__file__),
"pyadd.py")
test_pyadd = Executable(spec['python'].command.path + " " + file_pyadd)
# Run tests for each available stack
for bh_stack in stacks:
tty.info("Testing with bohrium stack '" + bh_stack + "'")
test_env["BH_STACK"] = bh_stack
cpp_output = test_cxxadd(output=str, env=test_env)
compare_output(cpp_output, "Success!\n")
# Python test (if +python)
if "+python" in spec:
py_output = test_pyadd(output=str, env=test_env)
compare_output(py_output, "Success!\n")
def patch(self):
""" Add binary .so file that are missing
Horrible hack"""
outdir = os.path.join(self.stage.source_path, 'bin')
indir = join_path(os.path.dirname(__file__), 'binary', 'linux')
for f in os.listdir(indir):
tty.info('Added file {0}'.format(f))
install(join_path(indir, f), join_path(outdir, f))
def _run_tools_checks(self):
"""Run the tools smoke test checks."""
tty.info('Running tools checks')
dirs = [self.prefix.bin] if self.spec.satisfies('@0.3.3:0.3.5') else []
checks = {
# Versions 0.3.3:0.3.5 (spack-build/bin/tools)
'replay': (['No input file'], 0),
}
self._run_checks(dirs, checks)
def _run_plots_checks(self):
"""Run the plots smoke test checks."""
tty.info('Running plots checks')
dirs = [self.prefix.bin] if self.spec.satisfies('@0.3.3:0.3.5') else []
checks = {
# Versions 0.3.3:0.3.5 (prefix.bin)
'plot_allocations': ([''], 0),
}
self._run_checks(dirs, checks)
def build(self):
"""Build the cache"""
tty.info("Building the MODULEPATH cache")
self._data = {}
self._data["version"] = cache_version_info
# Build the modulepath cache
for path in pymod.modulepath.walk():
path.find_modules()
self.write()
def setup_run_environment(self, env):
"""Sets the run environment (post-installation).
The environment comes from running:
.. code-block:: console
$ . $WM_PROJECT_DIR/etc/bashrc
"""
bashrc = join_path(self.projectdir, 'etc', 'bashrc')
minimal = True
if os.path.isfile(bashrc):
# post-install: source the installed bashrc
try:
mods = EnvironmentModifications.from_sourcing_file(
bashrc,
clean=True, # Remove duplicate entries
blacklist=[ # Blacklist these
# Inadvertent changes
# -------------------
'PS1', # Leave untouched
'MANPATH', # Leave untouched
# Unneeded bits
# -------------
# 'FOAM_SETTINGS', # Do not use with modules
# 'FOAM_INST_DIR', # Old
# 'FOAM_(APP|ETC|SRC|SOLVERS|UTILITIES)',
# 'FOAM_TUTORIALS', # May be useful
# 'WM_OSTYPE', # Purely optional value
# Third-party cruft - only used for orig compilation
# -----------------
'[A-Z].*_ARCH_PATH',
# '(KAHIP|METIS|SCOTCH)_VERSION',
# User-specific
# -------------
'FOAM_RUN',
'(FOAM|WM)_.*USER_.*',
],
whitelist=[ # Whitelist these
'MPI_ARCH_PATH', # Can be required for compilation
])
env.extend(mods)
minimal = False
tty.info('OpenFOAM bashrc env: {0}'.format(bashrc))
except Exception:
minimal = True
if minimal:
# pre-build or minimal environment
self.setup_minimal_environment(env)
def install(self, spec, prefix):
#
# we need to follow TBB's compiler selection logic to get the proper build + link flags
# but we still need to use spack's compiler wrappers
# to accomplish this, we do two things:
#
# * Look at the spack spec to determine which compiler we should pass to tbb's Makefile
#
# * patch tbb's build system to use the compiler wrappers (CC, CXX) for
# icc, gcc, clang
# (see coerce_to_spack())
#
self.coerce_to_spack("build")
if spec.satisfies('%clang'):
tbb_compiler = "clang"
elif spec.satisfies('%intel'):
tbb_compiler = "icc"
else:
tbb_compiler = "gcc"
mkdirp(prefix)
mkdirp(prefix.lib)
#
# tbb does not have a configure script or make install target
# we simply call make, and try to put the pieces together
#
make("compiler=%s" % (tbb_compiler))
# Note, I tried try tbb_build_dir option, which quickly errored out ...""
# make("compiler=%s tbb_build_dir=%s" %(tbb_compiler,prefix.lib))
# install headers to {prefix}/include
install_tree('include', prefix.include)
# install libs to {prefix}/lib
tbb_lib_names = ["libtbb", "libtbbmalloc", "libtbbmalloc_proxy"]
for lib_name in tbb_lib_names:
# install release libs
fs = glob.glob(join_path("build", "*release", lib_name + ".*"))
if len(fs) < 1:
tty.error("Failed to find release lib: " + lib_name)
for f in fs:
tty.info("installing:" + f)
install(f, prefix.lib)
# install debug libs if they exist
fs = glob.glob(join_path("build", "*debug", lib_name + "_debug.*"))
for f in fs:
tty.info("installing:" + f)
install(f, prefix.lib)
def log_info(module, mode, string, **fmt_kwds):
"""Log an information message to the user
Arguments:
module (Module): The module being executed
mode (Mode): The mode of execution
string (str): The informational message
"""
pymod.modes.assert_known_mode(mode)
tty.info(string.format(**fmt_kwds), reported_by=module.fullname),
def try_import(self, module, abstract_spec_str):
test_fn, info = functools.partial(_try_import_from_store, module), {}
if test_fn(query_spec=abstract_spec_str, query_info=info):
return True
tty.info("Bootstrapping {0} from pre-built binaries".format(module))
abstract_spec, bincache_platform = self._spec_and_platform(
abstract_spec_str + ' ^' + spec_for_current_python())
data = self._read_metadata(module)
return self._install_and_test(abstract_spec, bincache_platform, data,
test_fn)
def add_standalone(self, spec):
if spec.package.is_extension:
tty.error(self._croot + 'Package %s is an extension.' % spec.name)
return False
if spec.external:
tty.warn(self._croot +
'Skipping external package: %s' % colorize_spec(spec))
return True
if self.check_added(spec):
tty.warn(self._croot + 'Skipping already linked package: %s' %
colorize_spec(spec))
return True
if spec.package.extendable:
# Check for globally activated extensions in the extendee that
# we're looking at.
activated = [
p.spec for p in spack.store.db.activated_extensions_for(spec)
]
if activated:
tty.error("Globally activated extensions cannot be used in "
"conjunction with filesystem views. "
"Please deactivate the following specs: ")
spack.cmd.display_specs(activated,
flags=True,
variants=True,
long=False)
return False
tree = LinkTree(spec.prefix)
if not self.ignore_conflicts:
conflict = tree.find_conflict(self.root)
if conflict is not None:
tty.error(self._croot +
"Cannot link package %s, file already exists: %s" %
(spec.name, conflict))
return False
conflicts = tree.merge(self.root,
link=self.link,
ignore=ignore_metadata_dir,
ignore_conflicts=self.ignore_conflicts)
self.link_meta_folder(spec)
if self.ignore_conflicts:
for c in conflicts:
tty.warn(self._croot + "Could not link: %s" % c)
if self.verbose:
tty.info(self._croot + 'Linked package: %s' % colorize_spec(spec))
return True
def remove_standalone(self, spec):
"""
Remove (unlink) a standalone package from this view.
"""
if not self.check_added(spec):
tty.warn(self._croot +
'Skipping package not linked in view: %s' % spec.name)
return
self.unmerge(spec)
self.unlink_meta_folder(spec)
if self.verbose:
tty.info(self._croot + 'Removed package: %s' % colorize_spec(spec))
def add_extra_files(foam_pkg, common, local, **kwargs):
"""Copy additional common and local files into the stage.source_path
from the openfoam-com/common and the package/assets directories,
respectively
"""
outdir = foam_pkg.stage.source_path
indir = join_path(os.path.dirname(__file__), 'common')
for f in common:
tty.info('Added file {0}'.format(f))
install(join_path(indir, f), join_path(outdir, f))
indir = join_path(foam_pkg.package_dir, 'assets')
for f in local:
tty.info('Added file {0}'.format(f))
install(join_path(indir, f), join_path(outdir, f))
def run(names, verbose=False):
"""Run tests with the supplied names. Names should be a list. If
it's empty, run ALL of the tests."""
verbosity = 1 if not verbose else 2
# If they didn't provide names of tests to run, then use the default
# list above.
if not names:
names = _test_names
else:
for test in names:
if test not in _test_names:
tty.error("%s is not a valid test name." % test,
"Valid names are:")
colify(_test_names, indent=4)
sys.exit(1)
runner = unittest.TextTestRunner(verbosity=verbosity)
testsRun = errors = failures = skipped = 0
for test in names:
module = _test_module + '.' + test
print module, test
suite = unittest.defaultTestLoader.loadTestsFromName(module)
tty.msg("Running test: %s" % test)
result = runner.run(suite)
testsRun += result.testsRun
errors += len(result.errors)
failures += len(result.failures)
skipped += len(result.skipped)
succeeded = not errors and not failures
tty.msg("Tests Complete.",
"%5d tests run" % testsRun,
"%5d skipped" % skipped,
"%5d failures" % failures,
"%5d errors" % errors)
if not errors and not failures:
tty.info("OK", format='g')
else:
tty.info("FAIL", format='r')
sys.exit(1)
def run(names, verbose=False):
"""Run tests with the supplied names. Names should be a list. If
it's empty, run ALL of Spack's tests."""
verbosity = 1 if not verbose else 2
if not names:
names = test_names
else:
for test in names:
if test not in test_names:
tty.error("%s is not a valid spack test name." % test,
"Valid names are:")
colify(test_names, indent=4)
sys.exit(1)
runner = unittest.TextTestRunner(verbosity=verbosity)
testsRun = errors = failures = 0
for test in names:
module = 'spack.test.' + test
print module
suite = unittest.defaultTestLoader.loadTestsFromName(module)
tty.msg("Running test: %s" % test)
result = runner.run(suite)
testsRun += result.testsRun
errors += len(result.errors)
failures += len(result.failures)
succeeded = not errors and not failures
tty.msg("Tests Complete.",
"%5d tests run" % testsRun,
"%5d failures" % failures,
"%5d errors" % errors)
if not errors and not failures:
tty.info("OK", format='g')
else:
tty.info("FAIL", format='r')
sys.exit(1)
def run(names, outputDir, verbose=False):
"""Run tests with the supplied names. Names should be a list. If
it's empty, run ALL of Spack's tests."""
if not names:
names = test_names
else:
for test in names:
if test not in test_names:
tty.error("%s is not a valid spack test name." % test,
"Valid names are:")
colify(sorted(test_names), indent=4)
sys.exit(1)
tally = Tally()
for test in names:
module = 'spack.test.' + test
print(module)
tty.msg("Running test: %s" % test)
runOpts = ["--with-%s" % spack.test.tally_plugin.Tally.name]
if outputDir:
xmlOutputFname = "unittests-{0}.xml".format(test)
xmlOutputPath = join_path(outputDir, xmlOutputFname)
runOpts += ["--with-xunit",
"--xunit-file={0}".format(xmlOutputPath)]
argv = [""] + runOpts + [module]
nose.run(argv=argv, addplugins=[tally])
succeeded = not tally.failCount and not tally.errorCount
tty.msg("Tests Complete.", "%5d tests run" % tally.numberOfTestsRun,
"%5d failures" % tally.failCount, "%5d errors" % tally.errorCount)
if succeeded:
tty.info("OK", format='g')
else:
tty.info("FAIL", format='r')
sys.exit(1)
def remove_one(spec, path, verbose=False):
'Remove any files found in `spec` from `path` and purge empty directories.'
if not os.path.exists(path):
return # done, short circuit
dotspack = transform_path(spec, '.spack', path)
if not os.path.exists(dotspack):
if verbose:
tty.info('Skipping nonexistent package: "%s"' % spec.name)
return
if verbose:
tty.info('Removing package: "%s"' % spec.name)
for dirpath, dirnames, filenames in os.walk(spec.prefix):
if not filenames:
continue
targdir = transform_path(spec, dirpath, path)
for fname in filenames:
dst = os.path.join(targdir, fname)
if not os.path.exists(dst):
continue
os.unlink(dst)
def add_standalone(self, spec):
if spec.package.is_extension:
tty.error(self._croot + 'Package %s is an extension.'
% spec.name)
return False
if spec.external:
tty.warn(self._croot + 'Skipping external package: %s'
% colorize_spec(spec))
return True
if self.check_added(spec):
tty.warn(self._croot + 'Skipping already linked package: %s'
% colorize_spec(spec))
return True
if spec.package.extendable:
# Check for globally activated extensions in the extendee that
# we're looking at.
activated = [p.spec for p in
spack.store.db.activated_extensions_for(spec)]
if activated:
tty.error("Globally activated extensions cannot be used in "
"conjunction with filesystem views. "
"Please deactivate the following specs: ")
spack.cmd.display_specs(activated, flags=True, variants=True,
long=False)
return False
self.merge(spec)
self.link_meta_folder(spec)
if self.verbose:
tty.info(self._croot + 'Linked package: %s' % colorize_spec(spec))
return True
def install(src, dest):
"""Manually install a file to a particular location."""
tty.info("Installing %s to %s" % (src, dest))
shutil.copy(src, dest)
set_install_permissions(dest)
copy_mode(src, dest)
def setup_environment(self, spack_env, run_env):
"""Add environment variables to the generated module file.
These environment variables come from running:
.. code-block:: console
$ . $WM_PROJECT_DIR/etc/bashrc
"""
# NOTE: Spack runs setup_environment twice.
# 1) pre-build to set up the build environment
# 2) post-install to determine runtime environment variables
# The etc/bashrc is only available (with corrrect content)
# post-installation.
bashrc = join_path(self.projectdir, 'etc', 'bashrc')
minimal = True
if os.path.isfile(bashrc):
# post-install: source the installed bashrc
try:
mods = EnvironmentModifications.from_sourcing_file(
bashrc,
clean=True, # Remove duplicate entries
blacklist=[ # Blacklist these
# Inadvertent changes
# -------------------
'PS1', # Leave unaffected
'MANPATH', # Leave unaffected
# Unneeded bits
# -------------
'FOAM_INST_DIR', # Possibly incorrect
'FOAM_(APP|ETC|SRC|SOLVERS|UTILITIES)',
'FOAM_TEST_.*_DIR',
'WM_NCOMPPROCS',
# 'FOAM_TUTORIALS', # can be useful
# Lots of third-party cruft
# -------------------------
'[A-Z].*_(BIN|LIB|INCLUDE)_DIR',
'[A-Z].*_SYSTEM',
'WM_THIRD_PARTY_.*',
'(BISON|FLEX|CMAKE|ZLIB)_DIR',
'(METIS|PARMETIS|PARMGRIDGEN|SCOTCH)_DIR',
# User-specific
# -------------
'FOAM_RUN',
'(FOAM|WM)_.*USER_.*',
],
whitelist=[ # Whitelist these
'MPI_ARCH_PATH', # Can be needed for compilation
'PYTHON_BIN_DIR',
])
run_env.extend(mods)
minimal = False
tty.info('foam-extend env: {0}'.format(bashrc))
except Exception:
minimal = True
if minimal:
# pre-build or minimal environment
tty.info('foam-extend minimal env {0}'.format(self.prefix))
run_env.set('FOAM_INST_DIR', os.path.dirname(self.projectdir)),
run_env.set('FOAM_PROJECT_DIR', self.projectdir)
run_env.set('WM_PROJECT_DIR', self.projectdir)
for d in ['wmake', self.archbin]: # bin added automatically
run_env.prepend_path('PATH', join_path(self.projectdir, d))
def get_uninstall_list(args, specs, env):
# Gets the list of installed specs that match the ones give via cli
# args.all takes care of the case where '-a' is given in the cli
uninstall_list = find_matching_specs(env, specs, args.all, args.force)
# Takes care of '-R'
active_dpts, inactive_dpts = installed_dependents(uninstall_list, env)
# if we are in the global scope, we complain if you try to remove a
# spec that's in an environment. If we're in an environment, we'll
# just *remove* it from the environment, so we ignore this
# error when *in* an environment
spec_envs = dependent_environments(uninstall_list)
spec_envs = inactive_dependent_environments(spec_envs)
# Process spec_dependents and update uninstall_list
has_error = not args.force and (
(active_dpts and not args.dependents) # dependents in the current env
or (not env and spec_envs) # there are environments that need specs
)
# say why each problem spec is needed
if has_error:
specs = set(active_dpts)
if not env:
specs.update(set(spec_envs)) # environments depend on this
for i, spec in enumerate(sorted(specs)):
# space out blocks of reasons
if i > 0:
print()
tty.info("Will not uninstall %s" % spec.cformat("$_$@$%@$/"),
format='*r')
dependents = active_dpts.get(spec)
if dependents:
print('The following packages depend on it:')
spack.cmd.display_specs(dependents, **display_args)
if not env:
envs = spec_envs.get(spec)
if envs:
print('It is used by the following environments:')
colify([e.name for e in envs], indent=4)
msgs = []
if active_dpts:
msgs.append(
'use `spack uninstall --dependents` to remove dependents too')
if spec_envs:
msgs.append('use `spack env remove` to remove from environments')
print()
tty.die('There are still dependents.', *msgs)
elif args.dependents:
for spec, lst in active_dpts.items():
uninstall_list.extend(lst)
uninstall_list = list(set(uninstall_list))
# only force-remove (don't completely uninstall) specs that still
# have external dependent envs or pkgs
removes = set(inactive_dpts)
if env:
removes.update(spec_envs)
# remove anything in removes from the uninstall list
uninstall_list = set(uninstall_list) - removes
return uninstall_list, removes
def setup_environment(self, spack_env, run_env):
"""Add environment variables to the generated module file.
These environment variables come from running:
.. code-block:: console
$ . $WM_PROJECT_DIR/etc/bashrc
"""
# NOTE: Spack runs setup_environment twice.
# 1) pre-build to set up the build environment
# 2) post-install to determine runtime environment variables
# The etc/bashrc is only available (with corrrect content)
# post-installation.
bashrc = join_path(self.projectdir, 'etc', 'bashrc')
minimal = True
if os.path.isfile(bashrc):
# post-install: source the installed bashrc
try:
mods = EnvironmentModifications.from_sourcing_file(
bashrc,
clean=True, # Remove duplicate entries
blacklist=[ # Blacklist these
# Inadvertent changes
# -------------------
'PS1', # Leave unaffected
'MANPATH', # Leave unaffected
# Unneeded bits
# -------------
'FOAM_SETTINGS', # Do not use with modules
'FOAM_INST_DIR', # Old
'FOAM_(APP|ETC|SRC|SOLVERS|UTILITIES)',
# 'FOAM_TUTORIALS', # can be useful
'WM_OSTYPE', # Purely optional value
# Third-party cruft - only used for orig compilation
# -----------------
'[A-Z].*_ARCH_PATH',
'(KAHIP|METIS|SCOTCH)_VERSION',
# User-specific
# -------------
'FOAM_RUN',
'(FOAM|WM)_.*USER_.*',
],
whitelist=[ # Whitelist these
'MPI_ARCH_PATH', # Can be needed for compilation
])
run_env.extend(mods)
minimal = False
tty.info('OpenFOAM bashrc env: {0}'.format(bashrc))
except Exception:
minimal = True
if minimal:
# pre-build or minimal environment
tty.info('OpenFOAM minimal env {0}'.format(self.prefix))
run_env.set('FOAM_PROJECT_DIR', self.projectdir)
run_env.set('WM_PROJECT_DIR', self.projectdir)
for d in ['wmake', self.archbin]: # bin added automatically
run_env.prepend_path('PATH', join_path(self.projectdir, d))
def create_host_config(self, spec, prefix):
"""
This method creates a 'host-config' file that specifies
all of the options used to configure and build conduit.
For more details see about 'host-config' files see:
http://software.llnl.gov/conduit/building.html
"""
#######################
# Compiler Info
#######################
c_compiler = env["SPACK_CC"]
cpp_compiler = env["SPACK_CXX"]
f_compiler = None
if self.compiler.fc:
# even if this is set, it may not exist so do one more sanity check
if os.path.isfile(env["SPACK_FC"]):
f_compiler = env["SPACK_FC"]
#######################################################################
# By directly fetching the names of the actual compilers we appear
# to doing something evil here, but this is necessary to create a
# 'host config' file that works outside of the spack install env.
#######################################################################
sys_type = spec.architecture
# if on llnl systems, we can use the SYS_TYPE
if "SYS_TYPE" in env:
sys_type = env["SYS_TYPE"]
##############################################
# Find and record what CMake is used
##############################################
if "+cmake" in spec:
cmake_exe = join_path(spec['cmake'].prefix.bin, "cmake")
else:
cmake_exe = which("cmake")
if cmake_exe is None:
msg = 'failed to find CMake (and cmake variant is off)'
raise RuntimeError(msg)
cmake_exe = cmake_exe.command
host_cfg_fname = "%s-%s-%s.cmake" % (socket.gethostname(),
sys_type,
spec.compiler)
cfg = open(host_cfg_fname, "w")
cfg.write("##################################\n")
cfg.write("# spack generated host-config\n")
cfg.write("##################################\n")
cfg.write("# {0}-{1}\n".format(sys_type, spec.compiler))
cfg.write("##################################\n\n")
# Include path to cmake for reference
cfg.write("# cmake from spack \n")
cfg.write("# cmake executable path: %s\n\n" % cmake_exe)
#######################
# Compiler Settings
#######################
cfg.write("#######\n")
cfg.write("# using %s compiler spec\n" % spec.compiler)
cfg.write("#######\n\n")
cfg.write("# c compiler used by spack\n")
cfg.write(cmake_cache_entry("CMAKE_C_COMPILER", c_compiler))
cfg.write("# cpp compiler used by spack\n")
cfg.write(cmake_cache_entry("CMAKE_CXX_COMPILER", cpp_compiler))
cfg.write("# fortran compiler used by spack\n")
if f_compiler is not None:
cfg.write(cmake_cache_entry("ENABLE_FORTRAN", "ON"))
cfg.write(cmake_cache_entry("CMAKE_Fortran_COMPILER", f_compiler))
else:
cfg.write("# no fortran compiler found\n\n")
cfg.write(cmake_cache_entry("ENABLE_FORTRAN", "OFF"))
#######################
# Python
#######################
cfg.write("# Python Support\n")
if "+python" in spec:
python_exe = join_path(spec['python'].prefix.bin, "python")
cfg.write("# Enable python module builds\n")
cfg.write(cmake_cache_entry("ENABLE_PYTHON", "ON"))
cfg.write("# python from spack \n")
cfg.write(cmake_cache_entry("PYTHON_EXECUTABLE", python_exe))
# install module to standard style site packages dir
# so we can support spack activate
py_ver_short = "python{0}".format(spec["python"].version.up_to(2))
pym_prefix = join_path("${CMAKE_INSTALL_PREFIX}",
"lib",
py_ver_short,
"site-packages")
# use pym_prefix as the install path
cfg.write(cmake_cache_entry("PYTHON_MODULE_INSTALL_PREFIX",
pym_prefix))
else:
cfg.write(cmake_cache_entry("ENABLE_PYTHON", "OFF"))
if "+doc" in spec:
cfg.write(cmake_cache_entry("ENABLE_DOCS", "ON"))
cfg.write("# sphinx from spack \n")
sphinx_build_exe = join_path(spec['py-sphinx'].prefix.bin,
"sphinx-build")
cfg.write(cmake_cache_entry("SPHINX_EXECUTABLE", sphinx_build_exe))
cfg.write("# doxygen from uberenv\n")
doxygen_exe = join_path(spec['doxygen'].prefix.bin, "doxygen")
cfg.write(cmake_cache_entry("DOXYGEN_EXECUTABLE", doxygen_exe))
else:
cfg.write(cmake_cache_entry("ENABLE_DOCS", "OFF"))
#######################
# MPI
#######################
cfg.write("# MPI Support\n")
if "+mpi" in spec:
cfg.write(cmake_cache_entry("ENABLE_MPI", "ON"))
cfg.write(cmake_cache_entry("MPI_C_COMPILER", spec['mpi'].mpicc))
# we use `mpicc` as `MPI_CXX_COMPILER` b/c we don't want to
# introduce linking deps to the MPI C++ libs (we aren't using
# C++ features of MPI) -- this happens with some versions of
# OpenMPI
cfg.write(cmake_cache_entry("MPI_CXX_COMPILER", spec['mpi'].mpicc))
cfg.write(cmake_cache_entry("MPI_Fortran_COMPILER",
spec['mpi'].mpifc))
else:
cfg.write(cmake_cache_entry("ENABLE_MPI", "OFF"))
#######################################################################
# I/O Packages
#######################################################################
cfg.write("# I/O Packages\n\n")
#######################
# HDF5
#######################
cfg.write("# hdf5 from spack \n")
if "+hdf5" in spec:
cfg.write(cmake_cache_entry("HDF5_DIR", spec['hdf5'].prefix))
else:
cfg.write("# hdf5 not built by spack \n")
#######################
# Silo
#######################
cfg.write("# silo from spack \n")
if "+silo" in spec:
cfg.write(cmake_cache_entry("SILO_DIR", spec['silo'].prefix))
else:
cfg.write("# silo not built by spack \n")
cfg.write("##################################\n")
cfg.write("# end spack generated host-config\n")
cfg.write("##################################\n")
cfg.close()
host_cfg_fname = os.path.abspath(host_cfg_fname)
tty.info("spack generated conduit host-config file: " + host_cfg_fname)
return host_cfg_fname
def create_host_config(self, spec, prefix, py_site_pkgs_dir=None):
"""
This method creates a 'host-config' file that specifies
all of the options used to configure and build conduit.
For more details about 'host-config' files see:
http://software.llnl.gov/conduit/building.html
Note:
The `py_site_pkgs_dir` arg exists to allow a package that
subclasses this package provide a specific site packages
dir when calling this function. `py_site_pkgs_dir` should
be an absolute path or `None`.
This is necessary because the spack `site_packages_dir`
var will not exist in the base class. For more details
on this issue see: https://github.com/spack/spack/issues/6261
"""
#######################
# Compiler Info
#######################
c_compiler = env["SPACK_CC"]
cpp_compiler = env["SPACK_CXX"]
f_compiler = None
if self.compiler.fc:
# even if this is set, it may not exist so do one more sanity check
if os.path.isfile(env["SPACK_FC"]):
f_compiler = env["SPACK_FC"]
#######################################################################
# By directly fetching the names of the actual compilers we appear
# to doing something evil here, but this is necessary to create a
# 'host config' file that works outside of the spack install env.
#######################################################################
sys_type = spec.architecture
# if on llnl systems, we can use the SYS_TYPE
if "SYS_TYPE" in env:
sys_type = env["SYS_TYPE"]
##############################################
# Find and record what CMake is used
##############################################
if "+cmake" in spec:
cmake_exe = spec['cmake'].command.path
else:
cmake_exe = which("cmake")
if cmake_exe is None:
msg = 'failed to find CMake (and cmake variant is off)'
raise RuntimeError(msg)
cmake_exe = cmake_exe.path
host_cfg_fname = "%s-%s-%s-conduit.cmake" % (socket.gethostname(),
sys_type,
spec.compiler)
cfg = open(host_cfg_fname, "w")
cfg.write("##################################\n")
cfg.write("# spack generated host-config\n")
cfg.write("##################################\n")
cfg.write("# {0}-{1}\n".format(sys_type, spec.compiler))
cfg.write("##################################\n\n")
# Include path to cmake for reference
cfg.write("# cmake from spack \n")
cfg.write("# cmake executable path: %s\n\n" % cmake_exe)
#######################
# Compiler Settings
#######################
cfg.write("#######\n")
cfg.write("# using %s compiler spec\n" % spec.compiler)
cfg.write("#######\n\n")
cfg.write("# c compiler used by spack\n")
cfg.write(cmake_cache_entry("CMAKE_C_COMPILER", c_compiler))
cfg.write("# cpp compiler used by spack\n")
cfg.write(cmake_cache_entry("CMAKE_CXX_COMPILER", cpp_compiler))
cfg.write("# fortran compiler used by spack\n")
if f_compiler is not None:
cfg.write(cmake_cache_entry("ENABLE_FORTRAN", "ON"))
cfg.write(cmake_cache_entry("CMAKE_Fortran_COMPILER", f_compiler))
else:
cfg.write("# no fortran compiler found\n\n")
cfg.write(cmake_cache_entry("ENABLE_FORTRAN", "OFF"))
#######################
# Python
#######################
cfg.write("# Python Support\n")
if "+python" in spec:
cfg.write("# Enable python module builds\n")
cfg.write(cmake_cache_entry("ENABLE_PYTHON", "ON"))
cfg.write("# python from spack \n")
cfg.write(cmake_cache_entry("PYTHON_EXECUTABLE",
spec['python'].command.path))
# only set dest python site packages dir if passed
if py_site_pkgs_dir:
cfg.write(cmake_cache_entry("PYTHON_MODULE_INSTALL_PREFIX",
py_site_pkgs_dir))
else:
cfg.write(cmake_cache_entry("ENABLE_PYTHON", "OFF"))
if "+doc" in spec:
cfg.write(cmake_cache_entry("ENABLE_DOCS", "ON"))
cfg.write("# sphinx from spack \n")
sphinx_build_exe = join_path(spec['py-sphinx'].prefix.bin,
"sphinx-build")
cfg.write(cmake_cache_entry("SPHINX_EXECUTABLE", sphinx_build_exe))
if "+doxygen" in spec:
cfg.write("# doxygen from uberenv\n")
doxygen_exe = spec['doxygen'].command.path
cfg.write(cmake_cache_entry("DOXYGEN_EXECUTABLE", doxygen_exe))
else:
cfg.write(cmake_cache_entry("ENABLE_DOCS", "OFF"))
#######################
# MPI
#######################
cfg.write("# MPI Support\n")
if "+mpi" in spec:
cfg.write(cmake_cache_entry("ENABLE_MPI", "ON"))
cfg.write(cmake_cache_entry("MPI_C_COMPILER", spec['mpi'].mpicc))
cfg.write(cmake_cache_entry("MPI_CXX_COMPILER",
spec['mpi'].mpicxx))
cfg.write(cmake_cache_entry("MPI_Fortran_COMPILER",
spec['mpi'].mpifc))
mpiexe_bin = join_path(spec['mpi'].prefix.bin, 'mpiexec')
if os.path.isfile(mpiexe_bin):
# starting with cmake 3.10, FindMPI expects MPIEXEC_EXECUTABLE
# vs the older versions which expect MPIEXEC
if self.spec["cmake"].satisfies('@3.10:'):
cfg.write(cmake_cache_entry("MPIEXEC_EXECUTABLE",
mpiexe_bin))
else:
cfg.write(cmake_cache_entry("MPIEXEC",
mpiexe_bin))
else:
cfg.write(cmake_cache_entry("ENABLE_MPI", "OFF"))
#######################################################################
# I/O Packages
#######################################################################
cfg.write("# I/O Packages\n\n")
#######################
# HDF5
#######################
cfg.write("# hdf5 from spack \n")
if "+hdf5" in spec:
cfg.write(cmake_cache_entry("HDF5_DIR", spec['hdf5'].prefix))
else:
cfg.write("# hdf5 not built by spack \n")
#######################
# Silo
#######################
cfg.write("# silo from spack \n")
if "+silo" in spec:
cfg.write(cmake_cache_entry("SILO_DIR", spec['silo'].prefix))
else:
cfg.write("# silo not built by spack \n")
cfg.write("##################################\n")
cfg.write("# end spack generated host-config\n")
cfg.write("##################################\n")
cfg.close()
host_cfg_fname = os.path.abspath(host_cfg_fname)
tty.info("spack generated conduit host-config file: " + host_cfg_fname)
return host_cfg_fname
def patch(self):
"""Copy additional files or other patching."""
add_extra_files(self, self.common, self.assets)
# Emit openfoam version immediately, if we resolved the wrong version
# it takes a very long time to rebuild!
tty.info('Build for ' + self.spec['openfoam'].format('$_$@$%@+$+'))
def install(src, dest):
"""Manually install a file to a particular location."""
tty.info("Installing %s to %s" % (src, dest))
shutil.copy(src, dest)
