def process(self, input, output):
username = "******"
password = "******"
lmClient = LifemapperClient(username, password)
# Get the JSON spec
jsonSpecification = input.value(LM.hasJSONExperimentSpecificationURL)
# Get published scenario layers
scenarioLayerIDs = []
for layer in input[LM.hasScenarioLayer]:
layerID = layer.value(LM.hasLayerID)
scenarioLayerIDs.append(str(layerID))
# Post scenario and save ID
lmClient.postScenario(scenarioLayerIDs)
#scenarioID = str(234)
scenarioID = lmClient.getScenarioID()
scenarioURL = lmClient.getScenarioURL()
# The URI generator
resourceURI = ResourceURI()
# Create the published scenario
scenario = RDFLibResource(output.graph, resourceURI.getURI("scenario"))
ScenarioClass = RDFLibResource(output.graph, LM.Scenario)
scenario.set(RDF.type, ScenarioClass)
scenario.set(LM.hasScenarioID, Literal(scenarioID))
scenario.set(LM.hasScenarioURL, Literal(scenarioURL))
scenario.set(LM.hasJSONExperimentSpecificationURL, jsonSpecification)
# Add scenarioID to output
output.set(LM.hasPublishedScenario, scenario)
def process(self, input, output):
username = "******"
password = "******"
lmClient = LifemapperClient(username, password)
# Get scenario id
scenario = input.value(LM.specifiesModellingScenario)
scenarioID = scenario.value(LM.hasScenarioID)
# Extract Algorithm
algorithm = input.value(LM.specifiesModellingAlgorithm)
algorithmCode = algorithm.value(LM.hasAlgorithmCode)
# Extract Parameter Bindings
params = algorithm.value(MD.behaviorControlledBy)
bindings = []
for param in params[MD.hasParameterMember]:
name = param.value(MD.hasParameterName)
value = param.value(MD.boundToValue)
bindings[name] = value
# Extract OccurrenceSetID
occurrenceSet = input.value(LM.specifiesOccurrenceSet)
occurrenceSetID = occurrenceSet.value(LM.hasOccurrenceSetID)
lmClient.postExperiment(algorithmCode, bindings, occurrenceSetID, scenarioID)
#resultURL = "http://somedomain.com/testURL"
#get experimentURL and id
experimentURL = lmClient.getExperimentURL()
experimentID = lmClient.getExperimentID()
print "experiment result URL %s " % experimentURL
# The URI generator
resourceURI = ResourceURI()
# Create the experiment result
experimentResult = RDFLibResource(output.graph, resourceURI.getURI("experimentResult"))
experimentResultClass = RDFLibResource(output.graph, LM.ExperimentResult)
experimentResult.set(RDF.type, experimentResultClass)
experimentResult.set(LM.hasExperimentResultURL, Literal(experimentURL))
experimentResult.set(LM.hasExperimentResultID, Literal(experimentID))
# Add the experiment result to the executed specification
output.set(LM.hasExperimentResult, experimentResult)
def process(self, input, output):
username = "******"
password = "******"
lmClient = LifemapperClient(username, password)
# Get file download URL of the TIFF layer
manif = input.value(DATA.hasManifestation)
tiffFileDownloadURL = manif.value(DATA.hasFileDownloadURL)
# Get the typeCode and layerUnits
typeCode = input.value(LM.hasTypeCode)
layerUnits = input.value(LM.hasLayerUnits)
# Get the JSON spec
jsonSpecification = input.value(LM.hasJSONExperimentSpecificationURL)
lmClient.postLayer(tiffFileDownloadURL, layerUnits, typeCode)
#layerID = str(12)
layerID = lmClient.getLayerID()
layerURL = lmClient.getLayerURL()
print "posted layer ID %s " % layerID
# The URI generator
resourceURI = ResourceURI()
# Create new manifestation
fileManifestation = RDFLibResource(output.graph, resourceURI.getURI("manifestation"))
FileManifestationClass = RDFLibResource(output.graph, DATA.FileManifestation)
fileManifestation.set(RDF.type, FileManifestationClass)
fileManifestation.set(DATA.hasLandingPageURL, Literal(layerURL))
# Create the ScenarioLayer
layer = RDFLibResource(output.graph, resourceURI.getURI("layer"))
ScenarioLayerClass = RDFLibResource(output.graph, LM.ScenarioLayer)
layer.set(RDF.type, ScenarioLayerClass)
layer.set(DATA.hasManifestation, fileManifestation)
layer.set(LM.hasLayerID, Literal(layerID))
layer.set(LM.hasLayerURL, Literal(layerURL))
layer.set(LM.hasJSONExperimentSpecificationURL, jsonSpecification)
output.set(LM.hasPublishedLayer, layer)