def get_gbif(species_key, species_name, base_dir):
"""Attempt to get gbif record for species."""
# Get points
json_points = get_points_from_gbif(species_key)
converted_points = []
if len(json_points) > 0:
# Convert points
converted_points = convert_json_to_point(
json_points,
itemgetter('species'),
itemgetter('decimalLongitude'),
itemgetter('decimalLatitude'),
flags_getter=itemgetter('issues'))
# Get file name
sp_filename = get_species_filename(species_name, base_dir, '_gbif', '.csv')
# Write points
write_points(sp_filename, converted_points)
def get_idigbio(species_key, species_name, base_dir):
"""Attempt to get idigbio record for species."""
# Get points
json_points = get_points_from_idigbio(species_key=species_key)
converted_points = []
if len(json_points) > 0:
# Convert points
converted_points = convert_json_to_point(
json_points,
species_chain_getter('indexTerms', 'canonicalname'),
chain_getter('indexTerms', 'geopoint', 'lon'),
chain_getter('indexTerms', 'geopoint', 'lat'),
flags_getter=chain_getter('indexTerms', 'flags'))
# Get file name
sp_filename = get_species_filename(species_name, base_dir, '_idigbio',
'.csv')
# Write points
write_points(sp_filename, converted_points)