Python create_codingsystem Examples

Example #1

File: loinc.py Project: bombica/indivo_codingsystems

def create_and_load_from(filepath):
    if not os.path.isfile(filepath):
        print "Can't load LOINC, the file does not exist at %s" % filepath
        return
    
    codingsystem = create_codingsystem('loinc', 'LOINC')
    load(open(filepath, "r"), codingsystem)

Example #2

File: loinc.py Project: liyocee/indivo_codingsystems

def create_and_load_from(filepath):
    if not os.path.isfile(filepath):
        print "Can't load LOINC, the file does not exist at %s" % filepath
        return

    codingsystem = create_codingsystem('loinc', 'LOINC')
    load(open(filepath, "r"), codingsystem)

Example #3

File: hl7vaccines.py Project: Chatzimina/indivo_server

def create_and_load_from(filepath):
    if not os.path.isfile(filepath):
        print "Can't load HL7 v3.0 Vaccines, the file does not exist at %s" % filepath
        return
    
    codingsystem = create_codingsystem('hl7-v3-vaccines', 'HL7 v3.0 Vaccines')
    load(open(filepath, "r"), codingsystem)

Example #4

File: procedures.py Project: Chatzimina/indivo_server

def create_and_load_from(filepath):
    if not os.path.isfile(filepath):
        print "Can't load SNOMED, the file does not exist at %s" % filepath
        return
    
    codingsystem = create_codingsystem('procedures', 'SNOMED concept codes with UMLS')
    load(open(filepath, "r"), codingsystem)

Example #5

File: snomed.py Project: nagyist/indivo_codingsystems

def create_and_load_from(filepath):
    if not os.path.isfile(filepath):
        print "Can't load SNOMED, the file does not exist at %s" % filepath
        return

    codingsystem = create_codingsystem("snomed", "SNOMED concept codes with UMLS")
    load(open(filepath, "r"), codingsystem)

Example #6

File: rxterms.py Project: bombica/indivo_codingsystems

def create_and_load_from(filepath):
    if not os.path.isfile(filepath):
        print "Can't load RxTerms, the file does not exist at %s" % filepath
        return
    
    codingsystem = create_codingsystem('rxterms', 'RxTerms',
                                       key_field_name_1 = 'brand_name',
                                       key_field_name_2 = 'rxn_dose_form',
                                       key_field_name_3 = 'strength')
    load(open(filepath, "r"), codingsystem)

Example #7

File: allergies.py Project: Chatzimina/indivo_server

def create_and_load_from(filepath):
    if not os.path.isfile(filepath):
        print "Can't load RxTerms, the file does not exist at %s" % filepath
        return

    codingsystem = create_codingsystem('allergies',
                                       'allergies',
                                       key_field_name_1='brand_name',
                                       key_field_name_2='rxn_dose_form',
                                       key_field_name_3='strength')
    load(open(filepath, "r"), codingsystem)

Example #8

File: loinc.py Project: elliotcohen/indivo_server

def create_and_load_from(filepath):
    codingsystem = create_codingsystem('loinc', 'LOINC')
    load(open(filepath, "r"), codingsystem)

Example #9

File: hl7vaccines.py Project: elliotcohen/indivo_server

def create_and_load_from(filepath):        
    codingsystem = create_codingsystem('hl7-v3-vaccines', 'HL7 v3.0 Vaccines')
    load(open(filepath, "r"), codingsystem)

Example #10

File: loinc.py Project: cviedmai/indivo_server

def create_and_load_from(filepath):        
    codingsystem = create_codingsystem('loinc', 'LOINC')
    load(open(filepath, "r"), codingsystem)

Example #11

File: snomed.py Project: elliotcohen/indivo_server

def create_and_load_from(filepath):
    codingsystem = create_codingsystem('snomed',
                                       'SNOMED concept codes with UMLS')
    load(open(filepath, "r"), codingsystem)

Example #12

File: snomed.py Project: cviedmai/indivo_server

def create_and_load_from(filepath):        
    codingsystem = create_codingsystem('snomed', 'SNOMED concept codes with UMLS')
    load(open(filepath, "r"), codingsystem)

Example #13

File: rxterms.py Project: elliotcohen/indivo_server

def create_and_load_from(filepath):        
    codingsystem = create_codingsystem('rxterms', 'RxTerms',
                                       key_field_name_1 = 'brand_name',
                                       key_field_name_2 = 'rxn_dose_form',
                                       key_field_name_3 = 'strength')
    load(open(filepath, "r"), codingsystem)