#!/usr/bin/env python2 ''' Extract data directly. Usage: read.py <input> <output> ''' from lspreader import read from lspreader.misc import dump_pickle; from docopt import docopt; opts = docopt(__doc__,help=True); dump_pickle(opts['<output>'],read(opts['<input>']));
if opts['--x']: dims.append('xi');
if opts['--y']: dims.append('yi');
if opts['--z']: dims.append('zi');
if len(dims)==0:
dims=['xi','yi','zi'];
#reading in using the reader.
frames=rd.read(opts['<input>'], gzip=opts['--gzip']);
if opts['--sort']:
vprint("sorting...");
frames[:] = [sortframe(frame) for frame in frames];
vprint("done");
#experimental hashing
if opts['--firsthash']:
d=firsthash(frames[0],dims, removedupes=True);
dump_pickle(opts['--firsthash'], d);
frames[:] = [addhash(frame,d,removedupes=True) for frame in frames];
elif opts['--hash']:
d = readfile(opts['--hash'],dumpfull=True);
frames[:] = [addhash(frame,d,removedupes=True) for frame in frames];
#outputting.
if opts['--hdf']:
import fasteners;
output = lambda :hdfoutput(opts['<output>'], frames, opts['--zip']);
if opts['--lock']:
output = fasteners.interprocess_locked(opts['--lock'])(output);
output();
elif not opts['<output>']:
for frame in frames:
outname = "{}.{}".format(opts['<input>'],frame['step']);
if opts['--dir']:
