def setUp(self):
rawPath = os.path.join(testDataDirectory, "hsc", "raw")
calibPath = os.path.join(testDataDirectory, "hsc", "calib")
self.repoPath = createDataRepository("lsst.obs.hsc.HscMapper", rawPath, calibPath)
self.butler = dafPersist.Butler(root=self.repoPath, calibRoot=calibPath)
# The following properties of the provided data are known a priori.
self.visit = 904024
self.ccdNum = 50
self.filter = 'i'
self.rawSize = (2144, 4241)
self.ccdSize = (2048, 4176)
self.exptime = 30.0
self.darktime = self.exptime # No explicit darktime
dateBeg = DateTime(56598.26106374757, DateTime.MJD, DateTime.UTC)
dateAvgNSec = dateBeg.nsecs() + int(0.5e9*self.exptime)
self.dateAvg = DateTime(dateAvgNSec, DateTime.TAI)
self.boresightRaDec = afwGeom.SpherePoint(320.7499250000, 0.500019444, degrees)
self.boresightAzAlt = afwGeom.SpherePoint(226.68922661, 63.04359233, degrees)
self.boresightAirmass = 1.121626027604189
self.boresightRotAngle = 270.0*degrees
self.rotType = RotType.SKY
self.obs_longitude = -155.476667*degrees
self.obs_latitude = 19.825556*degrees
self.obs_elevation = 4139
self.weath_airTemperature = MakeRawVisitInfo.centigradeFromKelvin(272.35)
self.weath_airPressure = MakeRawVisitInfo.pascalFromMmHg(621.7)
self.weath_humidity = 33.1
# NOTE: if we deal with DM-8053 and get UT1 implemented, ERA will change slightly.
lst = 340.189608333*degrees
self.era = lst - self.obs_longitude
def _bbox_for_coords(self, wcs, center_coord, width, height, units):
"""Returns a Box2I object representing the bounding box in pixels
of the target region.
@wcs: WCS object for the target region.
@center_coord: ICRS RA and Dec coordinate for the center of the target region.
@width: Width of the target region with units indicated by 'units' below.
@height: Height of the target region with units indicated by 'units' below.
@units: Units for height and width. 'pixel' or 'arcsecond'
"""
if units == "arcsec":
# center_coord center, RA and Dec with width and height in arcseconds
width_half_a = afw_geom.Angle((width / 2.0), afw_geom.arcseconds)
height_half_a = afw_geom.Angle((height / 2.0), afw_geom.arcseconds)
min_ra = center_coord.getLongitude() - width_half_a
min_dec = center_coord.getLatitude() - height_half_a
max_ra = center_coord.getLongitude() + width_half_a
max_dec = center_coord.getLatitude() + height_half_a
ll_coord = afw_geom.SpherePoint(min_ra, min_dec)
ll_coord_pix = wcs.skyToPixel(ll_coord)
ur_coord = afw_geom.SpherePoint(max_ra, max_dec)
ur_coord_pix = wcs.skyToPixel(ur_coord)
p2i_min = afw_geom.Point2I(ll_coord_pix)
p2i_max = afw_geom.Point2I(ur_coord_pix)
bbox = afw_geom.Box2I(p2i_min, p2i_max)
elif units == "pixel":
# center_coord center, RA and Dec with width and height in pixels
ctr_coord_pix = wcs.skyToPixel(center_coord)
min_ra_pix = int(ctr_coord_pix.getX() - width // 2)
min_dec_pix = int(ctr_coord_pix.getY() - height // 2)
p2i = afw_geom.Point2I(min_ra_pix, min_dec_pix)
bbox = afw_geom.Box2I(p2i, afw_geom.Extent2I(width, height))
else:
raise Exception("invalid units {}".format(units))
return bbox
def setUp(self):
rawPath = os.path.join(testDataDirectory, "hsc", "raw")
calibPath = os.path.join(testDataDirectory, "hsc", "calib")
self.repoPath = createDataRepository("lsst.obs.hsc.HscMapper", rawPath, calibPath)
self.butler = dafPersist.Butler(root=self.repoPath, calibRoot=calibPath)
# The following properties of the provided data are known a priori.
self.visit = 904024
self.ccdNum = 50
self.filter = 'i'
self.rawSize = (2144, 4241)
self.ccdSize = (2048, 4176)
self.exptime = 30.0
self.darktime = self.exptime # No explicit darktime
self.dateAvg = DateTime(56598.26165414352, DateTime.MJD, DateTime.TAI)
self.boresightRaDec = afwGeom.SpherePoint(320.7499250000, 0.500019444, degrees)
self.boresightAzAlt = afwGeom.SpherePoint(226.68922661, 63.04359233, degrees)
self.boresightAirmass = 1.121626027604189
self.boresightRotAngle = 270.0*degrees
self.rotType = RotType.SKY
self.obs_longitude = -155.476667*degrees
self.obs_latitude = 19.825556*degrees
self.obs_elevation = 4139
self.weath_airTemperature = -0.8
self.weath_airPressure = 62170.
self.weath_humidity = 33.1
# NOTE: if we deal with DM-8053 and get UT1 implemented, ERA will change slightly.
self.era = 2.3659570321481826*radians
def testSmallSrc(self):
"""Verify that a source image that is too small will not raise an exception
This tests another bug that was fixed in ticket #2441
"""
fromWcs = afwGeom.makeSkyWcs(
crpix=afwGeom.Point2D(0, 0),
crval=afwGeom.SpherePoint(359, 0, afwGeom.degrees),
cdMatrix=afwGeom.makeCdMatrix(scale=1.0e-8*afwGeom.degrees),
)
fromExp = afwImage.ExposureF(afwImage.MaskedImageF(1, 1), fromWcs)
toWcs = afwGeom.makeSkyWcs(
crpix=afwGeom.Point2D(0, 0),
crval=afwGeom.SpherePoint(358, 0, afwGeom.degrees),
cdMatrix=afwGeom.makeCdMatrix(scale=1.1e-8*afwGeom.degrees),
)
toExp = afwImage.ExposureF(afwImage.MaskedImageF(10, 10), toWcs)
warpControl = afwMath.WarpingControl("lanczos3")
# if a bug described in ticket #2441 is present, this will raise an
# exception:
numGoodPix = afwMath.warpExposure(toExp, fromExp, warpControl)
self.assertEqual(numGoodPix, 0)
imArr, maskArr, varArr = toExp.getMaskedImage().getArrays()
self.assertTrue(np.all(np.isnan(imArr)))
self.assertTrue(np.all(np.isinf(varArr)))
noDataBitMask = afwImage.Mask.getPlaneBitMask("NO_DATA")
self.assertTrue(np.all(maskArr == noDataBitMask))
def calculateAstropyDcr(visitInfo, wcs, filterInfo, dcrNumSubfilters):
"""Calculate the DCR shift using astropy coordinate transformations.
Parameters
----------
visitInfo : `lsst.afw.image.VisitInfo`
VisitInfo for the exposure.
wcs : `lsst.afw.geom.skyWcs.SkyWcs`
A wcs that matches the inputs.
filterInfo : `lsst.afw.image.Filter`
The filter definition, set in the current instruments' obs package.
dcrNumSubfilters : `int`
Number of sub-filters used to model chromatic effects within a band.
Returns
-------
dcrShift : `tuple` of two `float`
The 2D shift due to DCR, in pixels.
Uses numpy axes ordering (Y, X).
"""
elevation = visitInfo.getBoresightAzAlt().getLatitude()
azimuth = visitInfo.getBoresightAzAlt().getLongitude()
lambdaEff = filterInfo.getFilterProperty().getLambdaEff()
loc = EarthLocation(lat=visitInfo.getObservatory().getLatitude().asDegrees()*u.degree,
lon=visitInfo.getObservatory().getLongitude().asDegrees()*u.degree,
height=visitInfo.getObservatory().getElevation()*u.m)
date = visitInfo.getDate()
time = Time(date.get(date.MJD, date.TAI), format='mjd', location=loc, scale='tai')
altaz = SkyCoord(alt=elevation.asDegrees(), az=azimuth.asDegrees(),
unit='deg', obstime=time, frame='altaz', location=loc)
# The DCR calculations are performed at the boresight
ra0 = altaz.icrs.ra.degree*degrees
dec0 = altaz.icrs.dec.degree*degrees
x0, y0 = wcs.skyToPixel(afwGeom.SpherePoint(ra0, dec0))
dcrShift = []
# We divide the filter into "subfilters" with the full wavelength range
# divided into equal sub-ranges.
for wl0, wl1 in wavelengthGenerator(filterInfo, dcrNumSubfilters):
# Note that diffRefractAmp can be negative,
# since it is relative to the midpoint of the full band
diffRefractAmp0 = differentialRefraction(wavelength=wl0, wavelengthRef=lambdaEff,
elevation=elevation,
observatory=visitInfo.getObservatory(),
weather=visitInfo.getWeather())
diffRefractAmp1 = differentialRefraction(wavelength=wl1, wavelengthRef=lambdaEff,
elevation=elevation,
observatory=visitInfo.getObservatory(),
weather=visitInfo.getWeather())
diffRefractAmp = (diffRefractAmp0 + diffRefractAmp1)/2.
elevation1 = elevation + diffRefractAmp
altaz = SkyCoord(alt=elevation1.asDegrees(), az=azimuth.asDegrees(),
unit='deg', obstime=time, frame='altaz', location=loc)
ra1 = altaz.icrs.ra.degree*degrees
dec1 = altaz.icrs.dec.degree*degrees
x1, y1 = wcs.skyToPixel(afwGeom.SpherePoint(ra1, dec1))
dcrShift.append((y1-y0, x1-x0))
return dcrShift
def testAssertSpherePointsAlmostEqual(self):
"""Test assertSpherePointsAlmostEqual"""
for raDecDeg in ((45, 45), (-70, 89), (130, -89.5)):
raDecDeg = [val * afwGeom.degrees for val in raDecDeg]
sp0 = afwGeom.SpherePoint(*raDecDeg)
self.assertSpherePointsAlmostEqual(sp0,
sp0,
maxSep=1e-7 *
afwGeom.arcseconds)
# make sure specifying msg is acceptable
self.assertSpherePointsAlmostEqual(sp0,
sp0,
maxSep=1e-7 *
afwGeom.arcseconds,
msg="any")
for offAng in (0, 45, 90):
offAng = offAng * afwGeom.degrees
for offDist in (0.001, 0.1):
offDist = offDist * afwGeom.arcseconds
sp1 = sp0.offset(bearing=offAng, amount=offDist)
self.assertSpherePointsAlmostEqual(sp0,
sp1,
maxSep=offDist *
1.00001)
with self.assertRaises(AssertionError):
self.assertSpherePointsAlmostEqual(sp0,
sp1,
maxSep=offDist *
0.99999)
# make sure msg is appended
try:
self.assertSpherePointsAlmostEqual(sp0,
sp1,
maxSep=offDist *
0.99999,
msg="boo")
self.fail("Sphere point lists should be unequal")
except AssertionError as e:
errMsg = e.args[0]
self.assertTrue(errMsg.endswith("boo"))
# test wraparound in RA
sp2 = afwGeom.SpherePoint(raDecDeg[0] + 360 * afwGeom.degrees,
raDecDeg[1])
self.assertSpherePointsAlmostEqual(sp0,
sp2,
maxSep=1e-7 *
afwGeom.arcseconds)
def runDataRef(self, dataRef):
"""Report tracts and patches that are within a given region of a skymap
@param dataRef: data reference for sky map.
@return: a pipeBase.Struct with fields:
- ccdInfoSetDict: a dict of (tractId, patchIndex): set of CcdExposureInfo
"""
skyMap = dataRef.get(self.config.coaddName + "Coadd_skyMap")
# make coords in the correct order to form an enclosed space
raRange = (self.config.raDecRange[0], self.config.raDecRange[2])
decRange = (self.config.raDecRange[1], self.config.raDecRange[3])
raDecList = [
(raRange[0], decRange[0]),
(raRange[1], decRange[0]),
(raRange[1], decRange[1]),
(raRange[0], decRange[1]),
]
coordList = [
afwGeom.SpherePoint(ra, dec, afwGeom.degrees)
for ra, dec in raDecList
]
tractPatchList = skyMap.findTractPatchList(coordList)
for tractInfo, patchInfoList in tractPatchList:
for patchInfo in patchInfoList:
patchIndex = patchInfo.getIndex()
print("tract=%d patch=%d,%d" %
(tractInfo.getId(), patchIndex[0], patchIndex[1]))
def testAssertSpherePointListsAlmostEqual(self):
"""Test assertSpherePointListsAlmostEqual
"""
splist0 = [
afwGeom.SpherePoint(val[0] * afwGeom.degrees,
val[1] * afwGeom.degrees)
for val in ((45, 45), (-70, 89), (130, -89.5))
]
self.assertSpherePointListsAlmostEqual(splist0, splist0)
offDist = 1.1 * afwGeom.arcseconds
splist1 = [
sp0.offset(bearing=bearDeg * afwGeom.degrees, amount=offDist)
for sp0, bearDeg in zip(splist0, (-10, 78, 123))
]
self.assertSpherePointListsAlmostEqual(splist0,
splist1,
maxSep=offDist * 1.00001)
with self.assertRaises(AssertionError):
self.assertSpherePointListsAlmostEqual(splist0,
splist1,
maxSep=offDist * 0.99999)
# make sure msg is appended
try:
self.assertSpherePointListsAlmostEqual(splist0,
splist1,
maxSep=offDist * 0.99999,
msg="boo")
self.fail("Sphere point lists should be unequal")
except AssertionError as e:
errMsg = e.args[0]
self.assertTrue(errMsg.endswith("boo"))
def setUp(self):
self.crval = afwGeom.SpherePoint(44.0, 45.0, afwGeom.degrees)
self.crpix = afwGeom.Point2D(15000, 4000)
arcsecPerPixel = 1 / 3600.0
cdMatrix = afwGeom.makeCdMatrix(arcsecPerPixel * afwGeom.arcseconds)
self.wcs = afwGeom.makeSkyWcs(crval=self.crval,
crpix=self.crpix,
cdMatrix=cdMatrix)
refSchema = afwTable.SimpleTable.makeMinimalSchema()
self.refCentroidKey = afwTable.Point2DKey.addFields(
refSchema, "centroid", "centroid", "pixels")
self.refCoordKey = afwTable.CoordKey(refSchema["coord"])
self.refHasCentroidKey = refSchema.addField("hasCentroid", type="Flag")
self.refCat = afwTable.SimpleCatalog(refSchema)
# an alias is required to make src.getCentroid() work;
# simply defining a field named "slot_Centroid" doesn't suffice
srcSchema = afwTable.SourceTable.makeMinimalSchema()
self.srcCentroidKey = afwTable.Point2DKey.addFields(
srcSchema, "base_SdssCentroid", "centroid", "pixels")
srcAliases = srcSchema.getAliasMap()
srcAliases.set("slot_Centroid", "base_SdssCentroid")
self.srcCoordKey = afwTable.CoordKey(srcSchema["coord"])
self.sourceCat = afwTable.SourceCatalog(srcSchema)
def cutout_coadd_ra_dec(butler,
ra,
dec,
filter='r',
datasetType='deepCoadd',
**kwargs):
"""
Produce a cutout from coadd from the given butler at
the given RA, Dec in decimal degrees.
Notes
-----
Trivial wrapper around 'cutout_coadd_spherepoint'
Parameters
----------
butler: lsst.daf.persistence.Butler
Servant providing access to a data repository
ra: float
Right ascension of the center of the cutout, degrees
dec: float
Declination of the center of the cutout, degrees
filter: string
Filter of the image to load
Returns
-------
MaskedImage
"""
radec = afwGeom.SpherePoint(float(ra), float(dec), afwGeom.degrees)
return cutout_coadd_spherepoint(butler,
radec,
filter=filter,
datasetType=datasetType)
def joinMatchListWithCatalog(self, matchCat, sourceCat):
"""!Relink an unpersisted match list to sources and reference objects
A match list is persisted and unpersisted as a catalog of IDs produced by
afw.table.packMatches(), with match metadata (as returned by the astrometry tasks)
in the catalog's metadata attribute. This method converts such a match catalog
into a match list (an lsst.afw.table.ReferenceMatchVector) with links to source
records and reference object records.
@param[in] matchCat Unperisted packed match list (an lsst.afw.table.BaseCatalog).
matchCat.table.getMetadata() must contain match metadata,
as returned by the astrometry tasks.
@param[in,out] sourceCat Source catalog (an lsst.afw.table.SourceCatalog).
As a side effect, the catalog will be sorted by ID.
@return the match list (an lsst.afw.table.ReferenceMatchVector)
"""
matchmeta = matchCat.table.getMetadata()
version = matchmeta.getInt('SMATCHV')
if version != 1:
raise ValueError('SourceMatchVector version number is %i, not 1.' %
version)
filterName = matchmeta.getString('FILTER').strip()
ctrCoord = afwGeom.SpherePoint(matchmeta.getDouble('RA'),
matchmeta.getDouble('DEC'),
afwGeom.degrees)
rad = matchmeta.getDouble('RADIUS') * afwGeom.degrees
refCat = self.loadSkyCircle(ctrCoord, rad, filterName).refCat
refCat.sort()
sourceCat.sort()
return afwTable.unpackMatches(matchCat, refCat, sourceCat)
def _transformAndCheck(self, measConf, schema, transformTask):
"""Check the results of applying transformTask to a SourceCatalog.
@param[in] measConf Measurement plugin configuration.
@param[in] schema Input catalog schema.
@param[in] transformTask Instance of TransformTask to be applied.
For internal use by this test case.
"""
# There should now be one transformation registered per measurement plugin.
self.assertEqual(len(measConf.plugins.names), len(transformTask.transforms))
# Rather than do a real measurement, we use a dummy source catalog
# containing a source at an arbitrary position.
inCat = afwTable.SourceCatalog(schema)
r = inCat.addNew()
r.setCoord(afwGeom.SpherePoint(0.0, 11.19, afwGeom.degrees))
r[PLUGIN_NAME] = 1.0
wcs, photoCalib = Placeholder(), Placeholder()
outCat = transformTask.run(inCat, wcs, photoCalib)
# Check that all sources have been transformed appropriately.
for inSrc, outSrc in zip(inCat, outCat):
self.assertEqual(outSrc[PLUGIN_NAME], inSrc[PLUGIN_NAME])
self.assertEqual(outSrc[PLUGIN_NAME + "_transform"], inSrc[PLUGIN_NAME] * -1.0)
for field in transformTask.config.toDict()['copyFields']:
self.assertEqual(outSrc.get(field), inSrc.get(field))
# Check that the wcs and photoCalib objects were accessed once per transform.
self.assertEqual(wcs.count, len(transformTask.transforms))
self.assertEqual(photoCalib.count, len(transformTask.transforms))
def setUp(self):
# define the position and size of one CCD in the focal plane
self.pixelSizeMm = 0.024 # mm/pixel
self.ccdOrientation = 5 * degrees # orientation of pixel w.r.t. focal plane
self.plateScale = 0.15 * arcseconds # angle/pixel
self.bbox = afwGeom.Box2I(afwGeom.Point2I(0, 0),
afwGeom.Extent2I(2000, 4000))
self.crpix = afwGeom.Point2D(1000, 2000)
self.crval = afwGeom.SpherePoint(10 * degrees, 40 * degrees)
self.orientation = -45 * degrees
self.scale = 1.0 * arcseconds
# position of 0,0 pixel position in focal plane
self.ccdPositionMm = afwGeom.Point2D(25.0, 10.0)
self.pixelToFocalPlane = self.makeAffineTransform(
offset=afwGeom.Extent2D(self.ccdPositionMm),
rotation=self.ccdOrientation,
scale=self.pixelSizeMm,
)
cdMatrix = makeCdMatrix(scale=self.scale, orientation=self.orientation)
self.tanWcs = makeSkyWcs(crpix=self.crpix,
crval=self.crval,
cdMatrix=cdMatrix)
self.radPerMm = self.plateScale.asRadians(
) / self.pixelSizeMm # at center of field
bboxD = afwGeom.Box2D(self.bbox)
self.pixelPoints = bboxD.getCorners()
self.pixelPoints.append(bboxD.getCenter())
def testTicket2872(self):
"""Test that CoaddPsf.getAveragePosition() is always a position at which
we can call computeImage().
"""
scale = 0.2 * afwGeom.arcseconds
cdMatrix = afwGeom.makeCdMatrix(scale=scale)
wcs = afwGeom.makeSkyWcs(
crpix=afwGeom.Point2D(50, 50),
crval=afwGeom.SpherePoint(45.0, 45.0, afwGeom.degrees),
cdMatrix=cdMatrix,
)
kernel = measAlg.DoubleGaussianPsf(7, 7, 2.0).getKernel()
psf1 = measAlg.KernelPsf(kernel, afwGeom.Point2D(0, 50))
psf2 = measAlg.KernelPsf(kernel, afwGeom.Point2D(100, 50))
record1 = self.mycatalog.addNew()
record1.setPsf(psf1)
record1.setWcs(wcs)
record1.setD(self.weightKey, 1.0)
record1.setBBox(
afwGeom.Box2I(afwGeom.Point2I(-40, 0), afwGeom.Point2I(40, 100)))
record2 = self.mycatalog.addNew()
record2.setPsf(psf2)
record2.setWcs(wcs)
record2.setD(self.weightKey, 1.0)
record2.setBBox(
afwGeom.Box2I(afwGeom.Point2I(60, 0), afwGeom.Point2I(140, 100)))
coaddPsf = measAlg.CoaddPsf(self.mycatalog, wcs)
naiveAvgPos = afwGeom.Point2D(50, 50)
with self.assertRaises(pexExceptions.InvalidParameterError):
coaddPsf.computeKernelImage(naiveAvgPos)
# important test is that this doesn't throw:
coaddPsf.computeKernelImage()
def test(self):
schema = afwTable.ExposureTable.makeMinimalSchema()
schema.addField("ccd", np.int32, doc="CCD number")
schema.addField("visit", np.int32, doc="Visit number")
schema.addField("goodpix", np.int32, doc="Number of good pixels")
schema.addField("weight", float, doc="Weighting for this CCD")
ccds = afwTable.ExposureCatalog(schema)
scale = 1.0e-4*afwGeom.degrees
wcs = afwGeom.makeSkyWcs(crpix=afwGeom.Point2D(0.0, 0.0),
crval=afwGeom.SpherePoint(0.0, 0.0, afwGeom.degrees),
cdMatrix=afwGeom.makeCdMatrix(scale=scale))
new = ccds.addNew()
new.set("id", 0)
new.set("bbox_min_x", 0)
new.set("bbox_min_y", 0)
new.set("bbox_max_x", 1024)
new.set("bbox_max_y", 1024)
# The following lines are critical for reproducing the bug, because
# the code is reading a double starting at the 'ccd' (offset 24), and
# it sees a zero (from the zero in 'ccd' and the leading zeros in 'visit').
new.set("ccd", 0)
new.set("visit", 6789)
new.set("goodpix", 987654321)
new.set("weight", 1.0)
new.setPsf(measAlg.SingleGaussianPsf(23, 23, 2.345))
new.setWcs(wcs)
# In the presence of the bug, the following fails with
# lsst::pex::exceptions::RuntimeError thrown in src/CoaddPsf.cc
# with message: "Could not find a valid average position for CoaddPsf"
measAlg.CoaddPsf(ccds, wcs)
def get_coadd_id_for_ra_dec(skymap, ra, dec):
"""
Return a dict suitable for use as a data ID for a DM Butler
Parameters
----------
skymap: lsst.afw.skyMap.SkyMap [optional]
Pass in to avoid the Butler read. Useful if you have lots of such reads.
The skymap is just used to get the appropriate tract, patch.
If you want to warp to a different frame, see `wcs`.
ra: float
Right ascension of the center of the cutout, degrees
dec: float
Declination of the center of the cutout, degrees
Returns
-------
dict - Suitable for use as a DM Butler data ID.
"""
# Look up the tract, patch for the RA, Dec
radec = afwGeom.SpherePoint(ra, dec, afwGeom.degrees)
tract_info = skymap.findTract(radec)
patch_info = tract_info.findPatch(radec)
coadd_id = {
'tract': tract_info.getId(),
'patch': "%d,%d" % patch_info.getIndex()
}
return coadd_id
def getExp(self, ra, dec, **kwargs):
"""Get the exposure and pixel position corresponding to sky position
Parameters
-----------
ra, dec : float
Coordinates in degrees
Returns
-------
exp : afw.Exposure
xy : afwCoord.PixelCoord
Pixel coordinates in `exp` corresponding to ra, dec
Additional keyword arguments passed to `_get_dataId`.
"""
dataId = self._get_dataId(ra, dec, **kwargs)
exp = self._expFromId(dataId)
if self.dmap is not None:
obj = find_closest(self.dmap, ra, dec)
ra, dec = obj.ra, obj.dec
pos = afwGeom.SpherePoint(ra, dec, afwGeom.degrees)
wcs = self._WcsFromId(dataId)
xy = wcs.skyToPixel(pos)
print(ra, dec, xy)
return exp, xy
def display_cutout_image(butler,
ra,
dec,
vmin=None,
vmax=None,
label=None,
frame=None,
display=None,
backend='matplotlib',
show=True,
saveplot=False,
savefits=False,
old_matplotlib=False,
filter='r',
datasetType='deepCoadd'):
"""
Display a postage stamp for a given RA, Dec using LSST lsst.afw.display.
Parameters
----------
backend: string
Backend can be anything that lsst.afw.display and your
=configuration supports:
e.g. matplotlib, ds9, ginga, firefly.
Returns
-------
MaskedImage
Notes
-----
Parameters are the same as for make_cutout_image, except for the backend.
You definitely have the matplotlib backend.
ds9, ginga, and firefly can be set up but are non-trivial on the scale
of a simple Notebook.
"""
cutout_image = cutout_coadd_ra_dec(butler,
ra,
dec,
filter=filter,
datasetType='deepCoadd')
if savefits:
if isinstance(savefits, str):
filename = savefits
else:
filename = 'postage-stamp.fits'
cutout_image.writeFits(filename)
if display is None:
display = afwDisplay.Display(frame=frame, backend=backend)
radec = afwGeom.SpherePoint(ra, dec, afwGeom.degrees)
xy = cutout_image.getWcs().skyToPixel(radec)
display.mtv(cutout_image)
display.scale("asinh", "zscale")
display.dot('o', xy.getX(), xy.getY(), ctype='red')
display.show_colorbar()
return cutout_image
def cutout_from_exposure(src_image, ra, dec, width, height, unit="pixel"):
""" Get the Exposure cutout including wcs headers.
Parameters
----------
src_image : `afwImage.Exposure`
the source image.
ra : `float`
in degrees.
dec : `float`
in degrees.
width : int
in pixels.
height : int
in pixels
Returns
-------
cutout : `afwImage.Exposure`
"""
if unit == "arcsec":
# pixel scale is defined as Angle/pixel
wcs = src_image.getWcs()
ps = wcs.getPixelScale().asArcseconds()
if ps != 0:
width = width / ps
height = height / ps
else:
raise Exception("Unexpected: pixel scale = 0")
center = afwGeom.SpherePoint(ra, dec, afwGeom.degrees)
size = afwGeom.Extent2I(width, height)
cutout = src_image.getCutout(center, size)
return cutout
def cutout_from_skymap_id(self, skymap_id, filt, center_x, center_y,
center_unit, size_x, size_y, size_unit):
"""
Parameters
----------
skymap_id : string
filt : filter
center_x : float
center_y : float
center_unit : string
[ 'px', 'pix', 'pixel', 'pixels', 'arcsec', 'arcmin', 'deg' ]
size_x : float
size_y : float
size_unit : string
[ 'px', 'pix', 'pixel', 'pixels', 'arcsec', 'arcmin', 'deg' ]
Returns
-------
lsst.afw.Image or None
"""
ra_deg, dec_deg = center_x, center_y
width, height = size_x, size_y
skymap = SkymapImage(self._butler, skymap_id, self._log)
center_coord = afw_geom.SpherePoint(ra_deg, dec_deg, afw_geom.degrees)
image = skymap.get(center_coord, width, height, filt, center_unit)
return image
def setUp(self):
# Construct an arbitrary WCS for testing.
crval = afwGeom.SpherePoint(45.0, 45.0, afwGeom.degrees)
scale = 0.2*afwGeom.arcseconds
crpix = afwGeom.PointD(100, 100)
self.wcs = afwGeom.makeSkyWcs(crpix=crpix, crval=crval,
cdMatrix=afwGeom.makeCdMatrix(scale=scale))
def makeHSCExposure(self, galData, psfData, pixScale, variance):
ny, nx = galData.shape
exposure = afwImg.ExposureF(nx, ny)
exposure.getMaskedImage().getImage().getArray()[:, :] = galData
exposure.getMaskedImage().getVariance().getArray()[:, :] = variance
#Set the PSF
ngridPsf = psfData.shape[0]
psfLsst = afwImg.ImageF(ngridPsf, ngridPsf)
psfLsst.getArray()[:, :] = psfData
psfLsst = psfLsst.convertD()
kernel = afwMath.FixedKernel(psfLsst)
kernelPSF = meaAlg.KernelPsf(kernel)
exposure.setPsf(kernelPSF)
#prepare the wcs
#Rotation
cdelt = (pixScale * afwGeom.arcseconds)
CD = afwGeom.makeCdMatrix(cdelt, afwGeom.Angle(0.)) #no rotation
#wcs
crval = afwGeom.SpherePoint(afwGeom.Angle(0., afwGeom.degrees),
afwGeom.Angle(0., afwGeom.degrees))
#crval = afwCoord.IcrsCoord(0.*afwGeom.degrees, 0.*afwGeom.degrees) # hscpipe6
crpix = afwGeom.Point2D(0.0, 0.0)
dataWcs = afwGeom.makeSkyWcs(crpix, crval, CD)
exposure.setWcs(dataWcs)
#prepare the frc
dataCalib = afwImg.makePhotoCalibFromCalibZeroPoint(63095734448.0194)
exposure.setPhotoCalib(dataCalib)
return exposure
def makeVisitInfo():
"""Return a non-NaN visitInfo."""
return afwImage.VisitInfo(exposureId=10313423,
exposureTime=10.01,
darkTime=11.02,
date=dafBase.DateTime(65321.1, dafBase.DateTime.MJD, dafBase.DateTime.TAI),
ut1=12345.1,
era=45.1*afwGeom.degrees,
boresightRaDec=afwGeom.SpherePoint(23.1, 73.2, afwGeom.degrees),
boresightAzAlt=afwGeom.SpherePoint(134.5, 33.3, afwGeom.degrees),
boresightAirmass=1.73,
boresightRotAngle=73.2*afwGeom.degrees,
rotType=afwImage.RotType.SKY,
observatory=Observatory(11.1*afwGeom.degrees, 22.2*afwGeom.degrees, 0.333),
weather=Weather(1.1, 2.2, 34.5),
)
def makeMatches(self, refCat, srcCat, nSrc):
for i in range(nSrc):
refSrc = refCat.addNew()
srcSrc = srcCat.addNew()
raDeg, decDeg = np.random.randn(2)
coord = afwGeom.SpherePoint(raDeg, decDeg, afwGeom.degrees)
refSrc.set("g_flux", 10**(-0.4*18))
refSrc.set("r_flux", 10**(-0.4*18))
refSrc.set("resolved", False)
refSrc.set("photometric", True)
refSrc.setCoord(coord)
srcSrc.setCoord(coord)
srcSrc.set(srcSrc.getTable().getPsfFluxKey(), 10.)
srcSrc.set(srcSrc.getTable().getPsfFluxErrKey(), 1.)
for flag in self.sourceSelector.config.badFlags:
srcSrc.set(flag, False)
mc = afwTable.MatchControl()
mc.symmetricMatch = False
mat = afwTable.matchRaDec(refCat, srcCat, 1.0 * afwGeom.arcseconds, mc)
self.assertEqual(len(mat), nSrc)
return mat
def averageRaDec(ra, dec):
"""Calculate average RA, Dec from input lists using spherical geometry.
Parameters
----------
ra : list of float
RA in [radians]
dec : list of float
Dec in [radians]
Returns
-------
float, float
meanRa, meanDec -- Tuple of average RA, Dec [radians]
"""
assert (len(ra) == len(dec))
angleRa = [afwGeom.Angle(r, afwGeom.radians) for r in ra]
angleDec = [afwGeom.Angle(d, afwGeom.radians) for d in dec]
coords = [
afwGeom.SpherePoint(ar, ad, afwGeom.radians)
for (ar, ad) in zip(angleRa, angleDec)
]
meanRa, meanDec = afwGeom.averageSpherePoint(coords)
return meanRa.asRadians(), meanDec.asRadians()
def testTransform(self):
dims = afwGeom.Extent2I(512, 512)
bbox = afwGeom.Box2I(afwGeom.Point2I(0, 0), dims)
radius = 5
offset = afwGeom.Extent2D(123, 456)
crval = afwGeom.SpherePoint(0 * afwGeom.degrees, 0 * afwGeom.degrees)
crpix = afwGeom.Point2D(0, 0)
cdMatrix = np.array([1.0e-5, 0.0, 0.0, 1.0e-5])
cdMatrix.shape = (2, 2)
source = afwGeom.makeSkyWcs(crval=crval,
crpix=crpix,
cdMatrix=cdMatrix)
target = afwGeom.makeSkyWcs(crval=crval,
crpix=crpix + offset,
cdMatrix=cdMatrix)
sourceSpanSet = afwGeom.SpanSet.fromShape(radius,
afwGeom.Stencil.CIRCLE)
sourceSpanSet = sourceSpanSet.shiftedBy(12, 34)
fpSource = afwDetect.Footprint(sourceSpanSet, bbox)
fpTarget = fpSource.transform(source, target, bbox)
self.assertEqual(len(fpSource.getSpans()), len(fpTarget.getSpans()))
self.assertEqual(fpSource.getArea(), fpTarget.getArea())
imSource = afwImage.ImageU(dims)
fpSource.spans.setImage(imSource, 1)
imTarget = afwImage.ImageU(dims)
fpTarget.spans.setImage(imTarget, 1)
subSource = imSource.Factory(imSource, fpSource.getBBox())
subTarget = imTarget.Factory(imTarget, fpTarget.getBBox())
self.assertTrue(np.all(subSource.getArray() == subTarget.getArray()))
# make a bbox smaller than the target footprint
bbox2 = afwGeom.Box2I(fpTarget.getBBox())
bbox2.grow(-1)
fpTarget2 = fpSource.transform(source, target, bbox2) # this one clips
fpTarget3 = fpSource.transform(source, target, bbox2,
False) # this one doesn't
self.assertTrue(bbox2.contains(fpTarget2.getBBox()))
self.assertFalse(bbox2.contains(fpTarget3.getBBox()))
self.assertNotEqual(fpTarget.getArea(), fpTarget2.getArea())
self.assertEqual(fpTarget.getArea(), fpTarget3.getArea())
# Test that peakCatalogs get Transformed correctly
truthList = [(x, y, 10) for x, y in zip(range(-2, 2), range(-1, 3))]
for value in truthList:
fpSource.addPeak(*value)
scaleFactor = 2
linTrans = afwGeom.LinearTransform(
np.matrix([[scaleFactor, 0], [0, scaleFactor]], dtype=float))
linTransFootprint = fpSource.transform(linTrans, fpSource.getBBox(),
False)
for peak, truth in zip(linTransFootprint.peaks, truthList):
# Multiplied by two because that is the linear transform scaling
# factor
self.assertEqual(peak.getIx(), truth[0] * scaleFactor)
self.assertEqual(peak.getIy(), truth[1] * scaleFactor)
def makeFakeWcs():
'''!Make a wcs to put in an exposure
@return a Wcs object
'''
return afwGeom.makeSkyWcs(crpix=afwGeom.Point2D(0.0, 0.0),
crval=afwGeom.SpherePoint(45.0, 45.0, afwGeom.degrees),
cdMatrix=afwGeom.makeCdMatrix(scale=1.0*afwGeom.degrees),
)
def setUp(self):
crval = afwGeom.SpherePoint(44, 45, afwGeom.degrees)
crpix = afwGeom.Point2D(15000, 4000)
scale = 1 * afwGeom.arcseconds
cdMatrix = afwGeom.makeCdMatrix(scale=scale, flipX=True)
self.tanWcs = afwGeom.makeSkyWcs(crpix=crpix, crval=crval, cdMatrix=cdMatrix)
self.loadData()
def makeSimpleImage():
wcs = afwGeom.makeSkyWcs(
crpix=afwGeom.Point2D(0, 0),
crval=afwGeom.SpherePoint(0, 0, afwGeom.degrees),
cdMatrix=afwGeom.makeCdMatrix(scale=2 * afwGeom.arcseconds),
)
im = afwImage.ExposureF(100, 100, wcs)
im.writeFits("simple.fits")
def _apply_cutout(self, data_id, src_img, ra, dec, width, height,
unit="pixel"):
"""Return an image centered on ra and dec (in degrees) with dimensions
height and width (in arcseconds by default).
- Determine approximate pixels per arcsec in the image by
calculating the length of line from the upper right corner of
the image to the lower left corner in pixels and arcsecs.
(This will fail at or very near the pole.)
- Use that to define a box for the cutout.
- Trim the box so it is entirely within the source image.
Parameters
----------
src_img : `afwImage.Exposure`
the source image.
data_id : `dict`
the image id.
ra : float
dec : float
in degrees.
height, width : float, float
Height and width are in pixels, by default.
Returns
-------
cutout: `afwImage.Exposure`
"""
self._log.debug("apply_cutout %f %f %f %f", ra, dec, width, height)
# False: do not remove FITS keywords from metadata
wcs = None
if isinstance(src_img, afwImage.Exposure):
wcs = src_img.getWcs()
elif data_id:
# Get the metadata for the source image.
metadata = self._metadata_from_data_id(data_id)
wcs = afwGeom.makeSkyWcs(metadata, strip=False)
if wcs is None:
raise Exception("wcs missing in source image")
radec = afwGeom.SpherePoint(ra, dec, afwGeom.degrees)
xy_wcs = wcs.skyToPixel(radec)
xy_center_x = xy_wcs.getX()
xy_center_y = xy_wcs.getY()
self._log.debug("ra=%f dec=%f xy_center=(%f,%f)",
ra, dec, xy_center_x, xy_center_y)
if unit == "arcsec":
# pixel scale is defined as Angle/pixel
ps = wcs.getPixelScale().asArcseconds()
if ps != 0:
width = width / ps
height = height / ps
else:
self._log.debug("pixel scale = 0!")
cutout = self.cutout_from_src(src_img, xy_center_x, xy_center_y, width,
height, wcs)
return cutout