def _process_file_descriptions(obj, eng):
d = Deposition(obj)
try:
draft = d.get_draft("_files")
except DraftDoesNotExists:
return
# draft_files = draft.values.get('file_description', [])
for f in d.files:
for df in draft.values.get('file_description', []):
if f.uuid == df.get('file_id', None):
f.description = df.get('description', '')
d.update()
def _merge_record(obj, eng):
d = Deposition(obj)
sip = d.get_latest_sip(sealed=False)
# Get the current record, which contains all fields.
current_record = get_record(
sip.metadata.get('recid'), reset_cache=True
)
form_class = d.get_draft(draft_id).form_class
# Create a simplified record from the current record, that only
# contains fields concerning this deposition.
current_simple_record = deposition_record(
current_record,
[form_class],
pre_process_load=pre_process_load,
post_process_load=post_process_load,
process_export=partial(process_export, d),
)
# Create a simplified record from the changes the user have made.
changed_simple_record = make_record(sip.metadata, is_dump=True)
# Make an initial patch of current record (e.g. some default values set
# by the form, might not exists in the current record)
for k in current_simple_record:
if k not in current_record:
current_record[k] = current_simple_record[k]
# Export clean dumps
current_simple_json = current_simple_record.dumps(clean=True)
changed_simple_json = changed_simple_record.dumps(clean=True)
current_full_json = current_record.dumps(clean=True)
# Merge changes from changed record into the current record.
sip.metadata = merge_func(
d,
current_full_json,
current_simple_json,
changed_simple_json,
)
# Ensure we are based on latest version_id to prevent being rejected in
# the bibupload queue.
hst_record = HstRECORD.query.filter_by(
id_bibrec=sip.metadata.get('recid')
).order_by(HstRECORD.job_date.desc()).first()
sip.metadata['modification_date'] = hst_record.job_date.isoformat()
d.update()
def skip_files(obj, eng):
if has_doi(obj, eng):
return True
d = Deposition(obj)
try:
draft = d.get_draft("_metadata")
if draft.values.get('upload_type', '') == 'dataset':
if int(draft.values.get('instrument', -1)) != -1:
current_app.logger.debug(draft.values)
return True
except (DraftDoesNotExists, ValueError):
# this should never happen
pass
return False