def testJobRoutes(self):
configure(self.config)
def add_job_route(name, pattern):
return call(name,
pattern,
traverse='/{jobid}',
factory=JobIdFactory)
fragments = '/results/{jobid}/fragments/{scanid}/{molid}.json'
eic = '/results/{jobid}/extractedionchromatogram/{molid}.json'
calls = [
add_job_route('status.json', '/status/{jobid}.json'),
add_job_route('status', '/status/{jobid}'),
add_job_route('results', '/results/{jobid}'),
add_job_route('molecules.json', '/results/{jobid}/molecules.json'),
add_job_route('molecules.csv', '/results/{jobid}/molecules.csv'),
add_job_route('molecules.sdf', '/results/{jobid}/molecules.sdf'),
add_job_route('fragments.json', fragments),
add_job_route('chromatogram.json',
'/results/{jobid}/chromatogram.json'),
add_job_route('mspectra.json',
'/results/{jobid}/mspectra/{scanid}.json'),
add_job_route('extractedionchromatogram.json', eic),
add_job_route('stderr.txt', '/results/{jobid}/stderr.txt'),
add_job_route('runinfo.json', '/results/{jobid}/runinfo.json'),
add_job_route('rpc.add_structures', '/rpc/{jobid}/add_structures'),
add_job_route('rpc.add_ms_data', '/rpc/{jobid}/add_ms_data'),
add_job_route('rpc.metabolize', '/rpc/{jobid}/metabolize'),
add_job_route('rpc.metabolize_one', '/rpc/{jobid}/metabolize_one'),
add_job_route('rpc.annotate', '/rpc/{jobid}/annotate'),
add_job_route('rpc.assign', '/rpc/{jobid}/assign'),
add_job_route('rpc.unassign', '/rpc/{jobid}/unassign'),
]
self.config.add_route.assert_has_calls(calls, any_order=True)
def testViews(self):
configure(self.config)
c = self.config
c.add_renderer.assert_called_once_with('jsonhtml',
jsonhtml_renderer_factory)
c.add_static_view.assert_called_once_with('static',
'magmaweb:static',
cache_max_age=3600)
c.scan.assert_called_once_with('magmaweb', ignore='magmaweb.tests')
def testViews(self):
configure(self.config)
c = self.config
c.add_renderer.assert_called_once_with('jsonhtml',
jsonhtml_renderer_factory)
c.add_static_view.assert_called_once_with('static',
'magmaweb:static',
cache_max_age=3600)
c.scan.assert_called_once_with('magmaweb', ignore='magmaweb.tests')
def testRoutes(self):
configure(self.config)
calls = [
call('home', '/'),
call('help', '/help'),
call('login', '/login'),
call('defaults.json', '/defaults.json'),
call('startjob', '/start'),
call('jobfromscratch', '/results/'),
call('uploaddb', '/uploaddb'),
call('workspace', '/workspace'),
call('access_token', '/access_token.json'),
call('logout', '/logout'),
]
self.config.add_route.assert_has_calls(calls, any_order=True)
def testRoutes(self):
configure(self.config)
calls = [
call('home', '/'),
call('help', '/help'),
call('login', '/login'),
call('defaults.json', '/defaults.json'),
call('startjob', '/start'),
call('jobfromscratch', '/results/'),
call('uploaddb', '/uploaddb'),
call('workspace', '/workspace'),
call('access_token', '/access_token.json'),
call('logout', '/logout'),
]
self.config.add_route.assert_has_calls(calls, any_order=True)
def testJobRoutes(self):
configure(self.config)
def add_job_route(name, pattern):
return call(name, pattern,
traverse='/{jobid}',
factory=JobIdFactory)
fragments = '/results/{jobid}/fragments/{scanid}/{molid}.json'
eic = '/results/{jobid}/extractedionchromatogram/{molid}.json'
calls = [
add_job_route('status.json', '/status/{jobid}.json'),
add_job_route('status', '/status/{jobid}'),
add_job_route('results', '/results/{jobid}'),
add_job_route('molecules.json',
'/results/{jobid}/molecules.json'),
add_job_route('molecules.csv',
'/results/{jobid}/molecules.csv'),
add_job_route('molecules.sdf',
'/results/{jobid}/molecules.sdf'),
add_job_route('fragments.json', fragments),
add_job_route('chromatogram.json',
'/results/{jobid}/chromatogram.json'),
add_job_route('mspectra.json',
'/results/{jobid}/mspectra/{scanid}.json'),
add_job_route('extractedionchromatogram.json', eic),
add_job_route('stderr.txt', '/results/{jobid}/stderr.txt'),
add_job_route('runinfo.json',
'/results/{jobid}/runinfo.json'),
add_job_route('rpc.add_structures',
'/rpc/{jobid}/add_structures'),
add_job_route('rpc.add_ms_data', '/rpc/{jobid}/add_ms_data'),
add_job_route('rpc.metabolize', '/rpc/{jobid}/metabolize'),
add_job_route('rpc.metabolize_one',
'/rpc/{jobid}/metabolize_one'),
add_job_route('rpc.annotate', '/rpc/{jobid}/annotate'),
add_job_route('rpc.assign', '/rpc/{jobid}/assign'),
add_job_route('rpc.unassign', '/rpc/{jobid}/unassign'),
]
self.config.add_route.assert_has_calls(calls, any_order=True)
def testAuth(self):
configure(self.config)
self.assertTrue(self.config.set_authentication_policy.called)
self.assertTrue(self.config.set_authorization_policy.called)
self.config.set_root_factory.assert_called_once_with(RootFactory)
def testTransaction(self):
configure(self.config)
self.config.include.assert_called_once_with('pyramid_tm')
def testDatabase(self, initdb):
configure(self.config)
self.assertEquals(str(initdb.call_args[0][0].url),
'sqlite:///:memory:')
def testDefaults_True(self):
self.settings['auto_register'] = True
self.settings['restricted'] = True
configure(self.config)
calls = [call(auto_register=True), call(restricted=True)]
self.config.add_settings.assert_has_calls(calls, any_order=True)
def testDefaults_None(self):
configure(self.config)
calls = [call(auto_register=False), call(restricted=False)]
self.config.add_settings.assert_has_calls(calls, any_order=True)
def testDefaults_None(self):
configure(self.config)
calls = [call(auto_register=False), call(restricted=False)]
self.config.add_settings.assert_has_calls(calls, any_order=True)
def testAuth(self):
configure(self.config)
self.assertTrue(self.config.set_authentication_policy.called)
self.assertTrue(self.config.set_authorization_policy.called)
self.config.set_root_factory.assert_called_once_with(RootFactory)
def testTransaction(self):
configure(self.config)
self.config.include.assert_called_once_with('pyramid_tm')
def testDatabase(self, initdb):
configure(self.config)
self.assertEquals(str(initdb.call_args[0][0].url),
'sqlite:///:memory:')
def testDefaults_True(self):
self.settings['auto_register'] = True
self.settings['restricted'] = True
configure(self.config)
calls = [call(auto_register=True), call(restricted=True)]
self.config.add_settings.assert_has_calls(calls, any_order=True)
