Python make_clust Examples

Example #1

 def make_clust(self,
                dist_type='cosine',
                run_clustering=True,
                dendro=True,
                views=['N_row_sum', 'N_row_var'],
                linkage_type='average',
                sim_mat=False,
                filter_sim=0.1,
                calc_cat_pval=False,
                run_enrichr=None):
     '''
 The main function run by the user to make their clustergram.
 views is later referred to as requested_views.
 '''
     import make_clust_fun
     make_clust_fun.make_clust(self,
                               dist_type=dist_type,
                               run_clustering=run_clustering,
                               dendro=dendro,
                               requested_views=views,
                               linkage_type=linkage_type,
                               sim_mat=sim_mat,
                               filter_sim=filter_sim,
                               calc_cat_pval=calc_cat_pval,
                               run_enrichr=run_enrichr)

Example #2

File: __init__.py Project: abdohlman/clustergrammer

 def make_clust(self, dist_type='cosine', run_clustering=True,
                dendro=True, views=['pct_row_sum', 'N_row_sum'],
                linkage_type='average', sim_mat=False):
   ''' The main function run by the user to make their clustergram. 
   views is later referred to as requested_views.'''
   import make_clust_fun
   print('\n\n*********************************')
   print('using latest clustergrammer.py')
   print('*********************************\n\n')
   make_clust_fun.make_clust(self, dist_type, run_clustering, dendro, 
                                  views, linkage_type, sim_mat)

Example #3

File: __init__.py Project: MaayanLab/LINCS_GCT

 def make_clust(self, dist_type='cosine', run_clustering=True,
                dendro=True, views=['N_row_sum', 'N_row_var'],
                linkage_type='average', sim_mat=False, filter_sim=0.1,
                calc_cat_pval=False):
   ''' 
   The main function run by the user to make their clustergram. 
   views is later referred to as requested_views.
   '''
   import make_clust_fun
   make_clust_fun.make_clust(self, dist_type, run_clustering, dendro, 
                                  views, linkage_type, sim_mat, filter_sim,
                                  calc_cat_pval)

Example #4

File: __init__.py Project: wxyz/clustergrammer-web

 def make_clust(self,
                dist_type='cosine',
                run_clustering=True,
                dendro=True,
                views=['pct_row_sum', 'N_row_sum'],
                linkage_type='average',
                sim_mat=False):
     ''' The main function run by the user to make their clustergram.
 views is later referred to as requested_views.'''
     import make_clust_fun
     make_clust_fun.make_clust(self, dist_type, run_clustering, dendro,
                               views, linkage_type, sim_mat)

Example #5

File: __init__.py Project: MaayanLab/clustergrammer-web

    def make_clust(
        self,
        dist_type="cosine",
        run_clustering=True,
        dendro=True,
        views=["pct_row_sum", "N_row_sum"],
        linkage_type="average",
        sim_mat=False,
    ):
        """ The main function run by the user to make their clustergram.
    views is later referred to as requested_views."""
        import make_clust_fun

        make_clust_fun.make_clust(self, dist_type, run_clustering, dendro, views, linkage_type, sim_mat)