return rc.FORBIDDEN
else:
return rc.FORBIDDEN
if request.method == 'POST':
global_id = request.POST.get('global_id', None)
if global_id and Workflow.objects.filter(global_id=global_id).count() == 0:
return rc.NOT_FOUND
input = request.POST.get('input', None)
workflow = Workflow.objects.get(global_id=global_id)
form = TavernaExecutionForm()
taverna_execution = form.save(commit=False)
n = TavernaExecution.objects.filter(title__contains=workflow.metadata['name'], ticket=ticket).count() + 1
title = workflow.metadata['name'] + " execution " + str(n)
taverna_execution.title = title
taverna_execution.t2flow = get_file_data(workflow.t2flow)
if input!=None:
taverna_execution.baclava = base64.b64decode(input)
else:
taverna_execution.baclava = get_file_data(workflow.xml)
taverna_execution.owner = user
taverna_execution.status = 'Ready to run'
taverna_execution.executionstatus = 0
## only for test mode
taverna_execution.url = ''
taverna_execution.taverna_atomic_id = 404
####
taverna_execution.save()
if taverna_execution.t2flow!= "" and taverna_execution.baclava!= "":
def create(request):
if request.method == 'POST' and request.POST.get('workflowId', None):
form = TavernaExecutionForm()
workflow = Workflow.objects.get(global_id=request.POST['workflowId'])
taverna_execution = form.save(commit=False)
taverna_execution.title = request.POST['title']
taverna_execution.t2flow = get_file_data(workflow.t2flow)
if request.POST.get('default_inputs', 'off') == 'on':
if request.POST['input_definition_tab'] == 'baclava':
# get file from post request
taverna_execution.baclava = get_file_data(
request.FILES['inputFile']).replace('\r', '')
# if filename is a csv file we convert to baclava
fname = request.FILES['inputFile'].name
if (fname.lower().endswith(".csv")):
try:
tavernaIO = Taverna2WorkflowIO()
tavernaIO.loadInputsFromCSVString(
taverna_execution.baclava)
# the xml baclava file
taverna_execution.baclava = tavernaIO.inputsToBaclava()
# fail to load from csv
except Exception:
client.captureException()
if request.POST['input_definition_tab'] == 'dataset':
dataset_query = DatasetQuery.objects.get(
id=request.POST['dataset_queryid'])
tavernaIO = Taverna2WorkflowIO()
tavernaIO.loadFromT2FLOWString(taverna_execution.t2flow)
tavernaIO.loadInputsFromCSVFile
input_ports = tavernaIO.getInputPorts()
results = dataset_query.get_results(request.ticket)
header = dataset_query.get_header(request.ticket)
idx = 1
for input in input_ports:
dataset_results_field = request.POST[input]
values = []
if dataset_results_field in _CUSTOM_HEADERS:
tmpInput = "CustomInput-%d" % (idx,)
custom_value = str( request.POST[tmpInput] )
custom_vector = [ custom_value for _ in range(len(results)) ]
values.extend(custom_vector)
else:
index = header.index(dataset_results_field)
for row in results:
values.append(row[index])
tavernaIO.setInputPortValues(input, values)
idx += 1
taverna_execution.baclava = tavernaIO.inputsToBaclava()
else:
taverna_execution.baclava = get_file_data(workflow.xml)
#taverna_execution.baclava = get_file_data(workflow.xml)
taverna_execution.owner = request.user
taverna_execution.status = 'Ready to run'
taverna_execution.executionstatus = 0
## only for test mode
taverna_execution.url = request.POST['taverna_url']
taverna_execution.taverna_atomic_id = request.POST['taverna_servers']
####
taverna_execution.save()
request.session['statusmessage'] = "The workflow execution has been correctly created"
return redirect('workspace')
if request.method == 'GET' and request.GET.get('workflow_id',None):
workflow = Workflow.objects.get(pk=request.GET['workflow_id'])
n = TavernaExecution.objects.filter(title__contains=workflow.metadata['name'], ticket=request.ticket).count() + 1
form = TavernaExecutionForm()
form.fields['workflowId'].initial = workflow.global_id
form.fields['title'].initial = workflow.metadata['name'] + " execution " + str(n)
tavernaIO = Taverna2WorkflowIO()
dataset_queries = request.user.datasetquery_set.all().values('id','name')
return render_to_response(
'scs_workspace/create.html',
{'form': form, 'workflow': workflow, 'dataset_queries':dataset_queries},
RequestContext(request)
)
else:
raise PermissionDenied
props = {
'outgoing_port': request.POST.get('outgoing_port', ''),
'granted_roles': request.POST.get('granted_roles', ''),
'listening_port': request.POST.get('listening_port', ''),
'outgoing_address': request.POST.get('outgoing_address', ''),
}
configuration_file = create_configuration_file(props)
# update/set by file content
elif 'sumbitwithcontent' in request.POST:
configuration_file = request.POST.get('filecontent')
# update/set by file upload
elif 'sumbitwithfile' in request.POST:
configuration_file = get_file_data(request.FILES.get('fileupload'))
# check if the file is correct or not
configuration_file_ok = False
try:
extract_configurations(configuration_file)
configuration_file_ok = True
except Exception, e:
configuration_file_ok = False
if configuration_file_ok:
if "newconfiguration" in request.POST:
if cloudfacade.create_securityproxy_configuration(request.ticket, request.POST['name'], configuration_file):
data['statusmessage'] = "Security configuration file correctly created."
return redirect('security_configuration')
else:
