def pass_arrow(loc0, loc1):
import matplotlib.patches as patches
style = patches.ArrowStyle('->', head_length=5, head_width=5)
connection = patches.ConnectionStyle("Arc3", rad=0)
arrow = patches.FancyArrowPatch(tuple(loc0),
tuple(loc1),
arrowstyle=style,
connectionstyle=connection,
linestyle='-')
return arrow
def carry_arrow(loc0, loc1):
import matplotlib.patches as patches
style = patches.ArrowStyle('-')
connection = patches.ConnectionStyle("Arc3", rad=0)
arrow = patches.FancyArrowPatch(tuple(loc0),
tuple(loc1),
arrowstyle=style,
connectionstyle=connection,
linestyle='--')
return arrow
def plot_network(self,
scen_index=None,
show_title=True,
randomize_txt_box=True,
figsize=(6, 5),
path=None,
extension=".pdf"):
fig, ax = plt.subplots(figsize=figsize)
N = len(self.stochastic_problem.vertices)
pos = {
vertex: np.exp(2 * np.pi * 1j * k / N)
for k, vertex in enumerate(self.stochastic_problem.vertices, 1)
}
pos = {key: (value.real, value.imag) for key, value in pos.items()}
# Plot vertices
for vertex in self.stochastic_problem.vertices:
label = self._vertex_label(
vertex, scen_index) if scen_index is not None else None
ax.scatter(*pos[vertex],
c=self._vertex_color(vertex),
s=150,
alpha=0.8,
label=label)
ax.text(*pos[vertex],
vertex,
horizontalalignment='center',
verticalalignment='center')
# Plot arcs
for arc in self.stochastic_problem.all_arcs:
a = patches.FancyArrowPatch(pos[arc[0]],
pos[arc[1]],
connectionstyle="arc3,rad=.05",
**self._arc_style(arc, scen_index))
fig.gca().add_patch(a)
if scen_index is not None:
self._print_transportated_value(arc, scen_index,
randomize_txt_box, pos, ax)
if scen_index is not None:
ax.legend(bbox_to_anchor=(1, 1.15),
loc=1,
borderaxespad=1,
prop={'size': 7})
if show_title:
if scen_index is None:
obj_to_show = self.objective_value
ax.set_title(f"$v^*: {obj_to_show:.2f}$")
else:
obj_to_show = self.objective_value_at_leaves[scen_index]
ax.set_title(f"$v^*: {obj_to_show:.2f}$")
ax.axis('off')
self._save_fig(path, extension)
fig.show()
def get_arrow(arrow_length, arrow_width, arrow_courve, arrow_color,
future_arrow_curve):
# x_tail = 0.5
# y_tail = 0.16
#
# x_head = x_tail+arrow_courve-0.5
# y_head = y_tail+arrow_length
# dx = x_head - x_tail
# dy = y_head - y_tail
#
fig, axs = plt.subplots()
axs.set_xlim(-.5, 0.5)
axs.set_ylim(0, 1.25)
# arrow = mpatches.Arrow(x_tail, y_tail, dx, dy, width=arrow_width, color=arrow_color)
style = ("Simple,tail_width=" + str(50) + ",head_width=" + str(100) +
",head_length=" + str(30))
kw = dict(arrowstyle=style, color=arrow_color)
arrow = mpatches.FancyArrowPatch(
(0, 0), ((arrow_courve - 0.5), 0.3 + arrow_length * 1.25),
connectionstyle=("arc3,rad=" + str(-1 * (arrow_courve - 0.5))),
**kw)
style2 = ("Simple,tail_width=" + str(50) + ",head_width=" + str(100) +
",head_length=" + str(30))
kw2 = dict(arrowstyle=style2, color='k', fill=False, linestyle='dashed')
arrow2 = mpatches.FancyArrowPatch(
(0, 0), ((future_arrow_curve - 0.5), 0.3 + arrow_length * 1.25),
connectionstyle=("arc3,rad=" + str(-1 * (arrow_courve - 0.5))),
**kw2)
axs.add_patch(arrow2)
axs.add_patch(arrow)
axs.set_axis_off()
fig.add_axes(axs)
fig.canvas.draw()
# Now we can save it to a numpy array.
data = np.fromstring(fig.canvas.tostring_rgb(), dtype=np.uint8, sep='')
data = data.reshape(fig.canvas.get_width_height()[::-1] + (3, ))
return data
def add_arrow(ax, tailhead, **kwargs):
arrowDict = dict(linewidth=1.,
color='k',
arrowstyle='-|>',
mutation_scale=12 * 1)
arrowDict.update(kwargs)
p = patches.FancyArrowPatch(tailhead[0],
tailhead[1],
transform=ax.transData,
**arrowDict)
ax.add_patch(p)
def annotate_angle(ax, text, xloc, line, hline, buf=50):
"""Annotate angle between two given lines."""
posA, posB = Point(xloc, line.y(xloc)), Point(xloc, hline.y(xloc))
arrowstyle = '<->,head_length=5,head_width=3'
arrow = patches.FancyArrowPatch(posA=(posA.x, posA.y),
posB=(posB.x, posB.y),
arrowstyle=arrowstyle,
color='black', linewidth=2.0,
connectionstyle='arc3,rad=-0.5')
ax.add_patch(arrow)
ax.annotate(text, xy=(xloc + buf, get_midpoint(posA, posB).y))
def shot_arrow(loc0, loc1):
style = patches.ArrowStyle('-|>', head_length=2, head_width=2)
connection = patches.ConnectionStyle("Arc3", rad=0)
arrow = patches.FancyArrowPatch(tuple(loc0),
tuple(loc1),
arrowstyle=style,
connectionstyle=connection,
linestyle='-',
color='red',
linewidth=2)
return arrow
def mkarrow(start, end, curved=False, **kwargs):
alpha = kwargs.pop('alpha', 0.8)
return patches.FancyArrowPatch(
start,
end,
arrowstyle="Simple,tail_width=0.5,head_width=4,head_length=8",
connectionstyle="arc3,rad=.2"
if curved > 0 else "arc3,rad=-.2" if curved < 0 else None,
alpha=alpha,
**kwargs,
)
def add_arrow_to_line2D(
axes, line, arrow_locs=[0.2, 0.4, 0.6, 0.8],
arrowstyle='-|>', arrowsize=1, transform=None):
"""
Add arrows to a matplotlib.lines.Line2D at selected locations.
Parameters:
-----------
axes:
line: list of 1 Line2D obbject as returned by plot command
arrow_locs: list of locations where to insert arrows, % of total length
arrowstyle: style of the arrow
arrowsize: size of the arrow
transform: a matplotlib transform instance, default to data coordinates
Returns:
--------
arrows: list of arrows
"""
if (not(isinstance(line, list)) or not(isinstance(line[0],
mlines.Line2D))):
raise ValueError("expected a matplotlib.lines.Line2D object")
x, y = line[0].get_xdata(), line[0].get_ydata()
arrow_kw = dict(arrowstyle=arrowstyle, mutation_scale=10 * arrowsize)
color = line[0].get_color()
use_multicolor_lines = isinstance(color, np.ndarray)
if use_multicolor_lines:
raise NotImplementedError("multicolor lines not supported")
else:
arrow_kw['color'] = color
linewidth = line[0].get_linewidth()
if isinstance(linewidth, np.ndarray):
raise NotImplementedError("multiwidth lines not supported")
else:
arrow_kw['linewidth'] = linewidth
if transform is None:
transform = axes.transData
arrows = []
for loc in arrow_locs:
s = np.cumsum(np.sqrt(np.diff(x) ** 2 + np.diff(y) ** 2))
n = np.searchsorted(s, s[-1] * loc)
arrow_tail = (x[n], y[n])
arrow_head = (np.mean(x[n:n + 2]), np.mean(y[n:n + 2]))
p = mpatches.FancyArrowPatch(
arrow_tail, arrow_head, transform=transform,
**arrow_kw)
axes.add_patch(p)
arrows.append(p)
return arrows
def _make_arrow(self, pos, col, str, ax):
kw = dict(arrowstyle="Simple,tail_width=1,head_width=8,head_length=8",
color=col)
dist = np.linalg.norm(pos[1] - pos[0])
eps = self.areaRad / dist
posPrim = [(1 - eps) * pos[0] + eps * pos[1],
eps * pos[0] + (1 - eps) * pos[1]]
arrow123 = patches.FancyArrowPatch(
posPrim[0], posPrim[1], **kw) # , connectionstyle="arc3,rad=.5
ax.add_patch(arrow123)
def create_edge_patch(posA,
posB,
node_rad=0,
connectionstyle='arc3, rad=0.25',
facecolor='k',
head_length=10,
head_width=10,
tail_width=3,
**kwargs):
style = "simple,head_length=%d,head_width=%d,tail_width=%d"%(head_length, head_width, tail_width)
return pat.FancyArrowPatch(posA=posA, posB=posB, arrowstyle=style, connectionstyle=connectionstyle, facecolor=facecolor, shrinkA=node_rad, shrinkB=node_rad, **kwargs)
def add_robot_orientation(self):
theta = np.arctan2(self.frames[0][0].vy, self.frames[0][0].vx)
orientation = ((0, 0), (self.frames[0][0].radius * np.cos(theta),
self.frames[0][0].radius * np.sin(theta)))
self.robot_ori = patches.FancyArrowPatch(*orientation,
color='r',
arrowstyle=patches.ArrowStyle(
"->",
head_length=4,
head_width=2))
self.ax.add_artist(self.robot_ori)
def _get_patch(self, s: float) -> patches.Patch:
label = "Thin Sextupole"
colour = "tab:green"
return patches.FancyArrowPatch(
(s, 1),
(s, -1),
arrowstyle=patches.ArrowStyle("|-|"),
label=label,
edgecolor=colour,
facecolor=colour,
)
def update(frame_num):
nonlocal global_step
nonlocal arrows
global_step = frame_num
robot.center = robot_positions[frame_num]
for i, human in enumerate(humans):
human.center = human_positions[frame_num][i]
if display_numbers:
human_numbers[i].set_position(
(human.center[0] - x_offset,
human.center[1] + y_offset))
for arrow in arrows:
arrow.remove()
for i in range(self.human_num + 1):
orientation = orientations[i]
if i == 0:
arrows = [
patches.FancyArrowPatch(*orientation[frame_num],
color='black',
arrowstyle=arrow_style)
]
else:
arrows.extend([
patches.FancyArrowPatch(*orientation[frame_num],
color=cmap(i - 1),
arrowstyle=arrow_style)
])
for arrow in arrows:
ax.add_artist(arrow)
# if hasattr(self.robot.policy, 'get_attention_weights'):
# attention_scores[i].set_text('human {}: {:.2f}'.format(i, self.attention_weights[frame_num][i]))
time.set_text('Time: {:.2f}'.format(frame_num *
self.time_step))
reward.set_text('Reward: {:.2f}'.format(
self.rewards[frame_num]))
reward_sum.set_text('Reward Sum: {:.2f}'.format(
sum(self.rewards[0:frame_num])))
def recurrent_connect(idx=180,
n_arrows=40,
i0_arrows=5,
step_arrows=3,
color=e_color,
xs=e_xs,
ys=e_ys,
yfrom_rectif=0.,
yto_rectif=-.03):
'''
Draws recurrent synapses using arc FancyArrowPatch
'''
style = "Simple,tail_width=0.2,head_width=2,head_length=2"
kw = dict(arrowstyle=style, edgecolor=color)
alphas = 1 / np.exp(np.linspace(0., 2.5 * np.e, n_arrows))
lspace = np.linspace(i0_arrows,
n_arrows,
n_arrows // step_arrows,
dtype=int)
# Forward
for i0, x in enumerate(lspace):
arr = patches.FancyArrowPatch((xs[idx], ys[idx] + yfrom_rectif),
(xs[idx + x], ys[idx + x] + yto_rectif),
facecolor='none',
connectionstyle='arc3, rad = %.2f' % .75,
alpha=alphas[i0],
**kw)
ax.add_patch(arr)
# And back
for i0, x in enumerate(-lspace):
arr = patches.FancyArrowPatch(
(xs[idx], ys[idx] + yfrom_rectif),
(xs[idx + x], ys[idx + x] + yto_rectif),
facecolor='none',
connectionstyle='arc3, rad = %.2f' % -.75,
alpha=alphas[i0],
**kw)
ax.add_patch(arr)
def example_elliptic():
ax.clear()
ax.axis([-1.1, 2, -1.5, 1.6])
ax.axis("off")
ax.add_patch(unit_circle)
# the fixed point
z = 0.5 + 0.2j
# the elliptic transformation that rotates around z
# another fixed point will be the inversion of z
# about the unit circle.
M = mobius.Mobius.elliptic(z, 2.*np.pi/N)
# generate two orthogonal families of circles pass through z
para_grid, orth_grid = mobius.generate_grids_elliptic(z, N)
# get the fixed points, one of them will be z
p1, p2 = M.get_fixed_points()
# draw the first family
for i, c in enumerate(reversed(para_grid)):
col = cm.rainbow(i / N)
cs = {**circstyle1, "fc": col}
ls = linestyle1
mobius.plot_cline(ax, c, ls, cs)
# another family
for i, c in enumerate(orth_grid):
cs = circstyle2
ls = {**linestyle2, "color": "m"}
mobius.plot_cline(ax, c, ls, cs)
if abs(p1) > 1.:
p1, p2 = p2, p1
# draw fixed points
ax.plot(p1.real, p1.imag, "go", markersize=6)
ax.plot(p2.real, p2.imag, "bo", markersize=6)
# add labels
ax.text(p1.real - 0.2, p1.imag - 0.15, "$p_1$", **fontstyle)
ax.text(p2.real + 0.12, p2.imag + 0.1, "$p_2$", **fontstyle)
ax.text(-0.35, 0, "$M$", **fontstyle)
# draw arrow
start = -0.45 + 0.3j
end = M(start)
ax.add_patch(
patches.FancyArrowPatch(
(start.real, start.imag), (end.real, end.imag),
connectionstyle="arc3,rad=0.2",
**style
)
)
fig.savefig("elliptic.svg")
def draw_axes(self, ax):
path_axes = self.figure_projection.axes_path
# Добавляет связанные с телом оси к рисунку: х-зеленый, y-красный, z-синий
# lw - ширина линий
colors = ["green", "red", "blue"]
for i in range(len(path_axes)):
patch = patches.FancyArrowPatch(
path=path_axes[i],
color=colors[i],
lw=1,
arrowstyle="-|>,head_length=2,head_width=2")
ax.add_patch(patch)
def get_path(self, path, current):
path.append(
patches.FancyArrowPatch((current.x, current.y),
(current.x + self.dx, current.y + self.dy),
arrowstyle='-|>',
edgecolor='black',
facecolor='black',
mutation_scale=20,
lw=3.0))
current.x += self.dx
current.y += self.dy
return path
def _get_patch(self, s: float) -> Union[None, patches.Patch]:
label = self.name
colour = "black"
return patches.FancyArrowPatch(
(s, 1),
(s, -1),
arrowstyle=patches.ArrowStyle("-"),
label=label,
edgecolor=colour,
facecolor=colour,
)
def add_arrow(A, x0, y0, x1, y1):
N = len(x0)
i = 0
for i in range(N):
#A.arrow(x0[i], y0[i], x1[i], y1[i],
# head_width=0.05, head_length=0.1, fc='k', ec='k')
arrow = mpatches.FancyArrowPatch((x0[i], y0[i]), ((x1[i]), (y1[i])),
lw=2,
mutation_scale=30,
arrowstyle="-|>")
A.add_patch(arrow)
def animate(t):
global patch
temp = random.random()
ax.patches.remove(patch)
patch = patches.FancyArrowPatch((9, 56), (9, 52),
mutation_scale=100 * temp)
ax.add_patch(patch)
time_text.set_text(time_template % (t * dt))
return patch, time_text
def __init__(self, ax1, ax2, fig, text, button):
self.button = button
self.cid = None
self.ax1 = ax1
self.ax2 = ax2
self.text = text
self.return_similarity_matrix = [[], [], []]
self.fig = fig
self.patchl2 = patches.FancyArrowPatch(
(0, 0.5), (1, 0.6),
arrowstyle='<|-|>, head_length=0.1',
connectionstyle="arc3, rad=-0.3",
dpi_cor=2)
self.patchl3 = patches.FancyArrowPatch((0.85, 0.7), (1, 0.6),
arrowstyle='-',
dpi_cor=2)
self.patchl4 = patches.FancyArrowPatch((0.75, 0.55), (1, 0.61),
arrowstyle='-',
dpi_cor=2)
self.patchr1 = patches.FancyArrowPatch(
(1, 0.6), (0, 0.4),
arrowstyle='<->',
connectionstyle="arc3, rad=-0.3",
dpi_cor=2)
self.patchr3 = patches.FancyArrowPatch((0.01, 0.39), (0.15, 0.45),
arrowstyle='-',
dpi_cor=2)
self.patchr4 = patches.FancyArrowPatch((0.02, 0.41), (0.08, 0.32),
arrowstyle='-',
dpi_cor=2)
self.return_similarity_matrix = self.get_similarity_matrix()
def plot_array(result_array, ax, title=None):
for i in range(5):
if i == 0:
plt.scatter(result_array[i][0],
result_array[i][1],
s=30,
c="r",
marker='s')
elif i != 4:
plt.scatter(result_array[i][0],
result_array[i][1],
s=30,
c="b",
marker='+')
arrow = patches.FancyArrowPatch(result_array[i - 1],
result_array[i],
arrowstyle='->',
linestyle='--',
mutation_scale=20)
ax.add_patch(arrow)
else:
plt.scatter(result_array[i][0],
result_array[i][1],
s=30,
c="g",
marker="o")
arrow = patches.FancyArrowPatch(result_array[i - 1],
result_array[i],
arrowstyle='->',
linestyle='--',
mutation_scale=20)
ax.add_patch(arrow)
plt.xlim(-4.5, 4.5)
plt.ylim(-4.5, 4.5)
plt.xlabel("Valence", fontsize='12')
plt.ylabel("Arousal", fontsize='12')
if title != None:
plt.title(title, fontsize='15')
def plot_histogram(list_to_be_plotted,
varname,
marked=None,
savename=None,
smoothed=None,
x_min=None,
x_max=None,
dashed=None,
solid=None):
"""
Plots the histogram of list_to_be_plotted, with an asterix and an arrow at marked
Labels the variable axis according to varname
:param list_to_be_plotted: The list to be plotted
:param varname: The label for the variable-axis
:param marked: Where the arrow is to appear
:param savename: Filename under which the figure will be saved
:param smoothed: Either none or a smoothed object
:param x_min: The left end point of the range of variable-values
:param x_max: The right end point of the range of variable-values
:param dashed: Where to draw a vertical dashed line
:param solid: Where to draw a vertical solid line
:return:
"""
fig = plt.figure()
var = pd.Series(l)
var.dropna().hist(bins=30, grid=False, density=True)
if smoothed is not None:
x = np.linspace(x_min, x_max, 1000)
plt.plot(x, smoothed(x), "-r")
plt.xlabel(varname)
plt.ylabel("frequency")
if marked is not None:
plt.plot(marked, .02, marker="*", c="r")
style = "Simple,tail_width=0.5,head_width=4,head_length=8"
kw = dict(arrowstyle=style, color="k")
plt.text(11, .2, "critical value")
arrow = mp.FancyArrowPatch(posA=[11, .2],
posB=[marked + .25, 0.035],
connectionstyle="arc3,rad=-.25",
**kw)
plt.gca().add_patch(arrow)
if dashed is not None:
for val in dashed:
ax = plt.gca()
ax.axvline(x=val, color='black', linestyle="--")
if solid is not None:
for val in solid:
ax = plt.gca()
ax.axvline(x=val, color='black', linestyle="-")
plt.savefig(savename)
return fig
def plot_result(ax, data):
ax.plot(np.arange(1,data.shape[-1]+1), data[0], '-', color='tab:red', lw=1)
ax.text(120, 0.45, 'Q-learning', color='tab:red', fontsize=14)
ax.plot(np.arange(1,data.shape[-1]+1), data[1], '-', color='tab:green', lw=1)
ax.text(40, 0.25, 'Double\nQ-learning', color='tab:green', fontsize=14)
ax.hlines(0.05, -3, 300, linestyles='--', color='k', lw=1)
ax.text(300, 0.04, 'optimal', fontsize=12, horizontalalignment='right', verticalalignment='top')
ax.spines['top'].set_visible(False)
ax.spines['right'].set_visible(False)
ax.set_xlim((-3, 300))
ax.set_ylim((-0.02, 1))
ax.set_xticks([1, 100, 200, 300])
ax.set_yticks([0, 0.05, 0.25, 0.5, 0.75, 1])
ax.set_yticklabels([0, '5%', '25%', '50%', '75%', '100%'])
ax.set_xlabel('Episodes', fontsize=14)
ax.set_ylabel('% left\nactions\nfrom A', fontsize=14, rotation=0, labelpad=30)
Δ = 30
ax.add_patch(patches.Rectangle((Δ+100, .8), 10, .05, fc='#aaaaaa', ec='k'))
ax.plot(Δ+150, .825, 'ko', markersize=25, fillstyle='none')
ax.text(Δ+150, .825, 'B', fontsize=14, horizontalalignment='center', verticalalignment='center')
arrowstyle="Simple,tail_width=0.5,head_width=4,head_length=6"
ax.add_artist(patches.FancyArrowPatch((Δ+145, .85), (Δ+110, .85), connectionstyle="arc3, rad=.7", arrowstyle=arrowstyle, color="k"))
ax.add_artist(patches.FancyArrowPatch((Δ+143, .83), (Δ+110, .83), connectionstyle="arc3, rad=.2", arrowstyle=arrowstyle, color="k"))
ax.add_artist(patches.FancyArrowPatch((Δ+145, .8), (Δ+110, .8), connectionstyle="arc3, rad=-.7", arrowstyle=arrowstyle, color="k"))
ax.plot([Δ+127]*3, [.74, .845, .91], 'ko', markersize=4)
ax.plot([Δ+127]*3, [.766, .792, .818], 'o', markersize=1, color='gray')
ax.text(Δ+127, .92, r'$\mathcal{N}(-0.1,1)$', fontsize=12, horizontalalignment='center', verticalalignment='bottom')
ax.plot(Δ+195, .825, 'ko', markersize=25, fillstyle='none')
ax.text(Δ+195, .825, 'A', fontsize=14, horizontalalignment='center', verticalalignment='center')
ax.arrow(Δ+204, .825, 30, 0, head_width=.01, head_length=4, length_includes_head=True, color='k')
ax.plot(Δ+219, .825, 'ko', markersize=4)
ax.text(Δ+219, .835, '0', fontsize=10, horizontalalignment='center', verticalalignment='bottom')
ax.text(Δ+219, .81, 'right', fontsize=10, horizontalalignment='center', verticalalignment='top')
ax.arrow(Δ+186, .825, -28, 0, head_width=.01, head_length=4, length_includes_head=True, color='k')
ax.plot(Δ+172, .825, 'ko', markersize=4)
ax.text(Δ+172, .835, '0', fontsize=10, horizontalalignment='center', verticalalignment='bottom')
ax.text(Δ+172, .81, 'left', fontsize=10, horizontalalignment='center', verticalalignment='top')
ax.add_patch(patches.Rectangle((Δ+235, .8), 10, .05, fc='#aaaaaa', ec='k'))
def test_arrow_styles():
styles = mpatches.ArrowStyle.get_styles()
n = len(styles)
fig, ax = plt.subplots(figsize=(6, 10))
ax.set_xlim(0, 1)
ax.set_ylim(-1, n)
for i, stylename in enumerate(sorted(styles)):
patch = mpatches.FancyArrowPatch((0.1, i), (0.8, i),
arrowstyle=stylename,
mutation_scale=25)
ax.add_patch(patch)
def draw_single_arrow(self, tail_coord, head_coord, arrow_size):
x_head, y_head = head_coord
x_tail, y_tail = tail_coord
ax = self.fig.add_axes([0, 0, 1, 1])
ax.patch.set_facecolor('None')
arrow = mpatches.FancyArrowPatch((x_tail, y_tail), (x_head, y_head),
mutation_scale=arrow_size,
arrowstyle="simple",
edgecolor=None,
color=self.color_transfer(
(66, 66, 66)))
ax.add_patch(arrow)
self.hide_axis(ax)
def plotEffectUncertaintiesPLLA(configuration, graphName):
# dataPacketLoss = [ao.pl for ao in configuration[0:60]]
# minPL, maxPL = min(dataPacketLoss), max(dataPacketLoss)
# dataEnergyConsumption = [ao.ec for ao in configuration[0:60]]
# minEC, maxEC = min(dataEnergyConsumption), max(dataEnergyConsumption)
mlp.rcParams['font.size'] = 18
# Plot 10 data points per graph
for i in range(1):
plt.figure(figsize=(10,10))
ax = plt.subplot(1, 1, 1)
# plot the arrows between the points
for j in range(i * 10, (i * 10) + 9):
first = configuration[j]
second = configuration[j+1]
disX = abs(first.pl - second.pl)
disY = abs(first.la - second.la)
dis = (disX**2 + disY**2)**.5
if dis != 0:
adjX = (disX / dis) * 0.025 * (1 if first.pl < second.pl else -1)
adjY = (disY / dis) * 0.009 * (1 if first.la < second.la else -1)
else:
adjX = 0
adjY = 0
ax.add_patch(mpatches.FancyArrowPatch(
(first.pl + adjX, first.la + adjY),
(second.pl - adjX, second.la - adjY),
mutation_scale=20)
)
# plot the points
for j in range(i * 10, (i + 1) * 10):
if j == i*10:
plt.scatter(configuration[j].pl, configuration[j].la, color='green', s=200, marker='*', edgecolors='black')
else:
plt.scatter(configuration[j].pl, configuration[j].la, color='green', s=150, marker='o', edgecolors='black')
plt.xlabel('Packet loss (%)')
plt.ylabel('Latency (%)')
# x1, x2, y1, y2 = plt.axis()
plt.plot([10,10], [0,8], color='red')
plt.plot([7,12], [5,5], color='red')
plt.axis([7, 12, 0, 8])
outputDir = createOrGetDir('EffectUncertaintiesPLLA')
plt.savefig(os.path.join(outputDir, f'EffectUncertainties_{graphName}_Cycles[{(i*10)+1}-{((i+1)*10)}].pdf'), bbox_inches='tight')
plt.close()
def plot_message(message, self_message=False):
x_loc = obj_x_locations_map[message.send_coordinates.sim_obj_id]
y_loc = message.send_coordinates.time
x_end = obj_x_locations_map[message.receive_coordinates.sim_obj_id]
y_end = message.receive_coordinates.time
connectionstyle = None
kw_args['color'] = self.plot_params['msg_to_other_color']
if self_message:
connectionstyle = f"arc3,rad={self.plot_params['msg_self_arrow_radius']}"
kw_args['color'] = self.plot_params['msg_to_self_color']
arrow = patches.FancyArrowPatch((x_loc, y_loc), (x_end, y_end),
connectionstyle=connectionstyle,
**kw_args)
plt.gca().add_patch(arrow)
def plot_feature(self, ax, feature, level, linewidth=1.0):
"""Create an Arrow Matplotlib patch with the feature's coordinates.
The Arrow points in the direction of the feature's strand.
If the feature has no direction (strand==0), the returned patch will
simply be a rectangle.
The x-coordinates of the patch are determined by the feature's
`start` and `end` while the y-coordinates are determined by the `level`
"""
x1, x2 = feature.start, feature.end
if feature.open_left:
x1 -= 1
if feature.open_right:
x2 += 1
if feature.strand == -1:
x1, x2 = x2, x1
x1, x2 = x1 - 0.5, x2 - 0.5
is_undirected = feature.strand not in (-1, 1)
head_is_cut = (feature.strand == 1
and feature.open_right) or (feature.strand == -1
and feature.open_left)
if is_undirected or head_is_cut:
head_length = 0.001
else:
width_pixel = self._get_ax_width(ax, unit="pixel")
head_length = (0.5 * width_pixel * feature.length /
self.sequence_length)
head_length = min(head_length, 0.6 * feature.thickness)
arrowstyle = mpatches.ArrowStyle.Simple(
head_width=feature.thickness,
tail_width=feature.thickness,
head_length=head_length,
)
y = self.feature_level_height * level
patch = mpatches.FancyArrowPatch(
[x1, y],
[x2, y],
shrinkA=0.0,
shrinkB=0.0,
arrowstyle=arrowstyle,
facecolor=feature.color,
zorder=0,
edgecolor=feature.linecolor,
linewidth=feature.linewidth,
)
ax.add_patch(patch)
return patch