def main(): parser = OptionParser(usage = "cn-avg_post_analysis_jobtree.py --cnavgout CN-AVG_outputdir --sampleid Sampleid --jobTree jobtreedir") add_analysis_options(parser) mcmcjobtree.add_mcmc_options(parser) Stack.addJobTreeOptions(parser) options, args = parser.parse_args() i = Stack(Setup(options)).startJobTree(options) if i: raise RuntimeError("The jobtree contains %d failed jobs.\n" % i)
def main(): parser = OptionParser(usage = "run_cn-avg_post_analysis_jobtree.py --samplelist samplelist.txt") parser.add_option("--samplelist", dest="samplelist", help="The list of CNAVG outputs and sample ids. Should have the form <directory><ID>") postjobtree.add_analysis_options(parser) mcmcjobtree.add_mcmc_options(parser) Stack.addJobTreeOptions(parser) options, args = parser.parse_args() i = Stack(Setup(options)).startJobTree(options) if i: raise RuntimeError("The jobtree contains %d failed jobs.\n" % i)