Python parse_meme_results Examples

Example #1

File: test_motifsearch.py Project: luckywalkingR/py-gsp

    def setup(self):
        print("settingup test_memeparse class")

        import memeparse
        meme_results = memeparse.parse_meme_results(DATA_FILE)
        from gsp import motifsearch
        # search a chunk of seqs otherwise too big to test
        self.gsp = motifsearch.MotifSearch(meme_results, stop=20)

Example #2

File: test_motifsearch.py Project: agapow/py-gsp

	def setup (self):
		print ("settingup test_memeparse class")
		
		import memeparse
		meme_results = memeparse.parse_meme_results (DATA_FILE)
		from gsp import motifsearch
		# search a chunk of seqs otherwise too big to test
		self.gsp = motifsearch.MotifSearch (meme_results, stop=20)

Example #3

File: test_memeparse.py Project: agapow/memeparse

	def setup (self):
		print ("settingup test_memeparse class")
		import memeparse
		self.meme_results = memeparse.parse_meme_results (DATA_FILE)