Python blast_records Examples

Example #1

def test_blast_records(simple_m8):
    test_path = join(util.file.get_test_input_path(), 'TestTaxonomy')
    with simple_m8 as f:
        records = list(metagenomics.blast_records(f))
    assert len(records) == 110
    assert records[0].bit_score == 63.5
    assert records[-1].bit_score == 67.4

Example #2

File: test_metagenomics.py Project: tianyabeef/viral-ngs

def test_blast_records(simple_m8):
    test_path = join(util.file.get_test_input_path(),
                             'TestTaxonomy')
    with simple_m8 as f:
        records = list(metagenomics.blast_records(f))
    assert len(records) == 110
    assert records[0].bit_score == 63.5
    assert records[-1].bit_score == 67.4