def __init__(self, parent, **opts):
BaseGui.__init__(self, parent, title="Database Tool", menus=["Connection", "Get", "Put"], pycommand=True)
controls = [
["Connection", "Choose Data Store", self.selectDB],
["Get", "List All Entries", self.list],
["Get", "Show Details", self.infoprint],
["Get", "Search", self.do_search],
["Get", "Download Single File", self.download],
["Get", "Download Several Files", self.downloadGroup],
["Put", "Upload Current File", self.upload],
]
self.fillMenus(controls)
self.mainSizer = wx.BoxSizer(wx.VERTICAL)
self.main.SetSizer(self.mainSizer)
self.main.SetAutoLayout(True)
self.SetAutoLayout(True)
self.mainSizer.Add(wx.StaticText(self.main, -1, "Connected To:"), 1, wx.GROW | wx.ALL | wx.ALIGN_CENTRE, 5)
self.dbid = wx.StaticText(self.main, -1, "")
self.mainSizer.Add(self.dbid, 1, wx.GROW | wx.ALL | wx.ALIGN_CENTRE, 5)
self.dbreccount = wx.StaticText(self.main, -1, "0 Records")
self.mainSizer.Add(self.dbreccount, 1, wx.GROW | wx.ALL | wx.ALIGN_CENTRE, 5)
self.selectDB(None, URLS[0], "/CercalSystem/")
self.doc = self.Parent.document
self.SetSize(wx.Size(500, 200))
def __init__(self, gui, cell):
self.gui=gui
self.cell=cell
self.selectedSections = self.cell._sections.values()
#self.selectedSections = [cell.getSection("section[117]")]
BaseGui.__init__(self, gui, title="Edit Cell %s" % cell.name(), menus=["File", "Selection", "Synapse", "Mechanism","Measurements", "Morphology"], pycommand=True,height=4)
commands=[["File", "Quit", lambda x: self.Destroy()],
["Selection", "Select Sections", self.makeSel],
['Selection', 'Select Spatial Region', self.selectLocation],
["Selection", "Export Selection", self.exportSel],
["Selection", "Import Selection", self.importSel],
["Selection", "Clear Selection", self.killSel],
["Synapse", "Synapse Info", self.synapseInfo],
["Synapse", "Make Masks", self.makeMasks],
["Synapse", "Mask Selected Sections", self.makeUniformMask],
["Synapse", "Make Synapses", self.makeSyn],
["Synapse", "Remove Synapses", self.delSyn],
["Synapse", "Scramble Synapses", self.randomSyn],
["Synapse", "Edit Synapses", self.editSyn],
["Synapse", "Silence Selection", self.silenceSel],
["Mechanism", "Set Mechanism Density", self.setProperty],
["Mechanism", "SMR cheat density", self.setPropertysmrcheat],
["Mechanism", "Copy Mechanisms", self.dupMech],
["Mechanism", "Insert Mechanism", self.addMech],
["Mechanism", "Remove Mechanism", self.delMech],
["Mechanism", "Strip All Mechanisms", self.nukeMech],
["Mechanism", "Load Parameters from File", self.loadParams],
["Mechanism", "Fit passive properties", self.setPass],
["Measurements", "Input Impedance", self.getRin],
["Morphology", "Random Connectivity", self.fuzzBall],
["Morphology", "Cut tips", self.antiFuzzBall],
["Morphology", "Uniform Sections", self.splitCell],
["Morphology", "Human Readable Names", self.assignNames],
["Morphology", "Simple Names", self.simpleNames],
["Morphology", "Load Morphology", self.getCellMorph]]
self.fillMenus(commands)
sizer = wx.BoxSizer(wx.VERTICAL)
sizer.Add(wx.StaticText(self.main, -1, "%s" % str(self.cell)), 0, wx.ALIGN_CENTRE|wx.ALL, 5)
self.info=wx.StaticText(self.main, -1, "00000 Sections, 00000 Synapses, 00 Channel Types")
sizer.Add(self.info, 1, wx.ALIGN_CENTRE|wx.ALL, 5)
self.nsel=wx.StaticText(self.main, -1,"%i (All) Sections Selected" % len(self.selectedSections))
sizer.Add(self.nsel, 1, wx.ALIGN_CENTRE|wx.ALL, 5)
self.main.SetSizer(sizer)
self.main.SetAutoLayout(True)
sizer.Fit(self)
self.setInfo()
self.SetSize(wx.Size(600,300))
def __init__(self, parent, exp):
BaseGui.__init__(
self,
parent,
id=-1,
title="RunControl",
menus=["File", "Recording", "Control"],
pycommand=True,
height=6,
memory=100000,
)
guicommands = [
["File", "Write Hoc", self.writeHoc],
["Recording", "Set Display", self.display],
["Recording", "Load neuron output", self.loadBat],
["File", "Quit", lambda x: self.Destroy()],
]
self.fillMenus(guicommands)
self.gui = parent
id = wx.NewId()
self.menus["Control"].AppendCheckItem(id, "Clear Directory")
wx.EVT_MENU(self, id, self.setCD)
self.CD = True
self.menus["Control"].Check(id, True)
self.exp = exp
self.exp.report = self.threadReport
self.xm = parent
sizer = wx.BoxSizer(wx.VERTICAL)
self.tit = wx.StaticText(self.main, -1, self.exp.upath())
sizer.Add(self.tit, 0, wx.GROW | wx.ALIGN_LEFT | wx.ALL, 0)
rhs = wx.BoxSizer(wx.HORIZONTAL)
l = wx.StaticText(self.main, -1, "Directory:")
rhs.Add(l, 0, wx.GROW | wx.ALIGN_LEFT | wx.ALL, 0)
cw = os.getcwd()
l = wx.StaticText(self.main, -1, cw)
rhs.Add(l, 0, wx.GROW | wx.ALIGN_LEFT | wx.ALL, 0)
sizer.Add(rhs, 0, wx.GROW | wx.ALL, 0)
self.main.SetSizer(sizer)
self.main.SetAutoLayout(True)
# self.SetSize((400,180))
sizer.Fit(self.main)
EVT_UPDATE_GUI(self, self.OnUpdate)
EVT_REPORT(self, self.OnReport)
def __init__(self, parent=None, **kwargs):
kwargs.update(self.init_defaults)
BaseGui.__init__(self, parent, **kwargs)
self.fillMenus(self.gen_controls())
self.mainSizer = wx.BoxSizer(wx.VERTICAL)
self.main.SetSizer(self.mainSizer)
self.main.SetAutoLayout(True)
if self.controlpanel:
self.panel=self.controlpanel(self.main, self)
self.mainSizer.Add(self.panel, self.panel.gr, wx.ALIGN_BOTTOM|wx.ALL, 5)
if self.preferences:
self.load_saved_prefs()
self.graph=None
self.newGraph(kwargs.get('gclass'), kwargs.get('size'))
def __init__(self, parent=None, opt=None):
BaseGui.__init__(self, parent, id=-1, title="Optimizer Analysis", menus = ["Data", "Units", "Analysis"], pycommand=True, height=6, memory=100000)
guicommands=[["Data","Load Data", self.load],
["Data", "Create Data Element", self.save],
["Data","----"],
["Data","Reload Analysis Module", self.bounce],
["Data","Quit", self.quit],
["Units", "Show", self.displayUnit],
["Units", "Assign", self.assign],
["Units", "Re-Evaluate", self.evalUnit]]
self.ga=opt
self.pars=opt.params()
self.condition={}
self.fillMenus(guicommands)
sizer = wx.BoxSizer(wx.VERTICAL)
self.tit = wx.StaticText(self.main, -1, 'No Algorithm')
sizer.Add(self.tit, 1, wx.GROW|wx.ALIGN_CENTRE|wx.ALL, 5)
self.sizeinf = wx.StaticText(self.main, -1, ' No Data ')
sizer.Add(self.sizeinf, 1, wx.GROW|wx.ALIGN_CENTRE|wx.ALL, 5)
self.stats = wx.StaticText(self.main, -1, ' -- ')
sizer.Add(self.stats, 1, wx.GROW|wx.ALIGN_CENTRE|wx.ALL, 5)
self.main.SetSizer(sizer)
self.main.SetAutoLayout(True)
sizer.Fit(self.main)
self.SetSize((600,200))
self.bounce()
self.np=len(self.pars._pars)
self.nunits=0
if opt.attrib('EvalConditions'):
self.hasEC=opt.attrib('EvalConditions')
else:
self.hasEC=0
storesize=self.np+1+self.hasEC
self.data=None
if ast.verify(opt.attrib('File'), storesize, 1):
self.ast=ast.ArrayStore(opt.attrib('File'), 'w')
else:
self.report("Optimizer File attribute does not refference a valid arraystore. You will need to load data by hand")
self.ast=None
self.showInfo()
def __init__(self, sim=None, **kwargs):
BaseGui.__init__(self, None, title="Robo Viewer", menus=["File", "Sim", "Controls"], pycommand=True,height=4, showframe=False)
controls=[["File", "Preferences", self.setPreferences],
["File", "Quit", lambda x:self.Destroy()],
["File", "Save State", self.saveState],
["File", "Load State", self.loadState],
["Sim", "Run 1 Frame", lambda x:self.runSim(1.0, 'frame')],
["Sim", "Run", lambda x:self.runSim('auto', 'sec')],
["Sim", "Clear recording", self.flushRec],
["Sim", "Reset", self.resetSim],
["Controls", "simple posture/control", self.simpCon],
["Controls", "Test random step", self.randTest],
["Controls", "Test custom step", self.stepTest],
["Controls", "Open Control File", self.getSteps],
["Controls", "Show Control File", self.showSteps],
]
self.fillMenus(controls)
self.preferenceInfo=[]
self.preferences = {'delay':0, 'step':.005, 'frame rate':24, 'record':0, 'runtime':2.0}
self.load_saved_prefs()
self.mainSizer = wx.BoxSizer(wx.VERTICAL)
self.main.SetSizer(self.mainSizer)
self.main.SetAutoLayout(True)
self.graph=RoboGraph(self.main)
self.graph.report=self.report
self.graph.keybindings['y']=lambda x:self.runSim(1.0, 'frame')
self.mainSizer.Add(self.graph, 1, wx.GROW|wx.ALIGN_CENTRE|wx.ALL, 5)
self.graph.Show(True)
self.mainSizer.Fit(self.main)
self.SetSize(wx.Size(600,700))
self.recdir=os.path.join(os.getcwd(), 'roboviewer')
self.frame=0
if not os.path.isdir(self.recdir):
os.mkdir(self.recdir)
self.sim=sim
from distutils.util import get_platform
if 'linux' in get_platform():
#this is a black magic bug workaround.
self.addmenucommand(["File", "Init", self.postInit])
else:
self.postInit()
def __init__(self, master=None, **kwargs):
BaseGui.__init__(self, master, title="Mien Update Manager", menus=["File"], pycommand=False, showframe=False)
self.preferences=getPrefs()
self.preferenceInfo=preferenceInfo
fmen=self.menus['File']
id = wx.NewId()
fmen.Insert(0, id, "Preferences")
wx.EVT_MENU(self, id, self.setPreferences)
id = wx.NewId()
fmen.Append(id, 'Quit')
wx.EVT_MENU(self, id, lambda x:self.Destroy())
self.mainSizer = wx.BoxSizer(wx.VERTICAL)
self.mainSizer.Add(wx.StaticText(self.main, -1, "MIEN: %s" % getMienDir()), 1, wx.ALIGN_CENTRE|wx.ALL, 5)
self.repostring=wx.StaticText(self.main, -1,"Repository: %s/%s" % (self.preferences['Repository'],self.preferences['Rev'] ))
self.mainSizer.Add(self.repostring, 0, wx.ALIGN_CENTRE|wx.ALL, 5)
self.blockpath=wx.StaticText(self.main, -1,"Installing blocks to : %s" % (self.preferences['BlockInstall'], ))
self.mainSizer.Add(self.blockpath, 0, wx.ALIGN_CENTRE|wx.ALL, 5)
box=wx.BoxSizer(wx.HORIZONTAL)
self.mods=AWList(self.main, -1, style=wx.LC_REPORT | wx.SUNKEN_BORDER)
self.mods.InsertColumn(0, "Package")
self.mods.InsertColumn(1, "Local Version")
self.mods.InsertColumn(2, "Repository Version")
self.mods.SetColumnWidth(0, 200)
box.Add(self.mods, 3,wx.GROW|wx.ALIGN_CENTRE|wx.ALL, 5)
bb=wx.BoxSizer(wx.VERTICAL)
for com in [ ('Edit Config', self.setPreferences), ('Scan Repository', self.scan), ('Select All', self.sellect), ('Show Descriptions', self.info), ('Install/Update', self.update), ('Remove', self.kill)]:
id = wx.NewId()
btn=wx.Button(self.main, id, com[0])
wx.EVT_BUTTON(self.main, id, com[1])
bb.Add(btn, 1, wx.GROW|wx.ALIGN_CENTRE|wx.ALL, 5)
box.Add(bb, 1, wx.GROW|wx.ALIGN_CENTRE|wx.ALL, 5)
self.mainSizer.Add(box, 15, wx.GROW|wx.ALIGN_CENTRE|wx.ALL, 5)
self.repo={'deps':None, 'scan':None}
self.fillList()
self.main.SetSizer(self.mainSizer)
self.main.SetAutoLayout(True)
self.mainSizer.Fit(self.main)
self.baseSizer.Fit(self)
def __init__(self, dv, **kwargs):
tty=kwargs.get('tty', None)
title=kwargs.get('title',"Locus Viewer")
BaseGui.__init__(self, dv, title=title, menus=["File", "Display"], pycommand=True,height=4, TTY=tty, showframe=False)
controls=[["File","Select Elements To Show", self.select],
["Display", "Show All Functions", self.allFuncs],
["Display", "Select Data", self.select],
]
self.dv = dv
if dv:
self.document = self.dv.document
self.fillMenus(controls)
self.mainSizer = wx.BoxSizer(wx.VERTICAL)
self.main.SetSizer(self.mainSizer)
self.main.SetAutoLayout(True)
self.graph=Graph(self.main, -1)
self.mainSizer.Add(self.graph, 1, wx.GROW|wx.ALIGN_CENTRE|wx.ALL, 5)
self.SetSize(wx.Size(800,600))
self.stdFileMenu()
self.data = []
def __init__(self, parent, ga):
BaseGui.__init__(self, parent, id=-1, title="Optimizer Control", menus = ["Algorithm"], pycommand=True, height=10, memory=100000, TTY=False)
guicommands=[["Algorithm","Test", self.test],
["Algorithm","Prep", self.prep],
["Algorithm","Load previous run", self.resume],
["Algorithm","Quick Resume", self.rerun],
["Algorithm","Run", self.run],
["Algorithm","Stop", self.stop],
["Algorithm","Snapshot", self.snapshot],
["Algorithm","Assign Best", self.assign],
["Algorithm","Quit", self.quit]]
self.fillMenus(guicommands)
self.ga=ga
self.runthread=None
self._oldreport=self.ga.report
self.ga.report = self.threadReport
sizer = wx.BoxSizer(wx.VERTICAL)
self.tit = wx.StaticText(self.main, -1, self.ga.attrib('File'))
sizer.Add(self.tit, 1, wx.GROW|wx.ALIGN_CENTRE|wx.ALL, 5)
pars=ga.params()
inf = "%i params, %.5g values" % (len(pars._pars), pars.size())
self.inf = wx.StaticText(self.main, -1,inf)
sizer.Add(self.inf, 1, wx.GROW|wx.ALIGN_CENTRE|wx.ALL, 5)
self.start = wx.StaticText(self.main, -1,'Not Running')
sizer.Add(self.start, 1, wx.GROW|wx.ALIGN_CENTRE|wx.ALL, 5)
self.stats = wx.StaticText(self.main, -1, '%i Units, best: %.3f' % (0, -1))
sizer.Add(self.stats, 1, wx.GROW|wx.ALIGN_CENTRE|wx.ALL, 5)
self.main.SetSizer(sizer)
self.main.SetAutoLayout(True)
sizer.Fit(self.main)
self.SetSize((400,400))
EVT_UPDATE_GUI(self, self.OnUpdate)
EVT_REPORT(self, self.OnReport)
def __init__(self, master=None, **kwargs):
if master:
pc=False
else:
pc=True
BaseGui.__init__(self, master, title="Cell Viewer", menus=["File", "Display", "Selection","Extensions", "Spatial"], pycommand=pc,height=4, showframe=False)
controls=[
["File", "Apply Filter to File", self.pruneFile],
["Display", "Select Plots", self.selPlots],
["Display", "Group Plots", self.groupPlots],
["Display", "Hide/Color Groups", self.groupOpts],
["Display", "Set View Toggle", self.setBlink],
["Display", "Change Background Color", self.setClearColor],
["Display", "Replot", self.addAll],
["Display", "Filter", self.setFilter],
['Selection',"Clear Selection", self.selectNone],
['Selection',"Show Selection", self.showSelection],
['Selection',"Export Point", self.exportPoint],
['Selection',"Import Point", self.importPoint],
['Selection',"Select Section", self.selectSec],
['Selection',"Select Radius", self.selectSphere],
['Selection',"Select Distal", self.selectDistal],
['Selection',"Select Proximal", self.selectProx],
['Selection',"Invert Selection", self.selectInverse],
['Selection',"Select Path", self.selectPath],
['Selection',"Center View on Point", self.centerOnPoint],
['Selection',"Select Distal", self.selectDistal],
['Selection',"Keep Select Colors", self.keepSelectionColors],
]
self.preferenceInfo=[
{"Name":"Cell Plot Style",
'Type':'List',
'Value':['frustum', 'mixed', 'line']},
{"Name":"Sphere Plot Style",
'Type':'List',
'Value':['Spheres', 'Fixed Points', 'Scaled Points']},
{"Name":"Always Reload Extensions",
"Type":"List",
"Value":[True, False]},
{"Name":"Show Point Labels",
"Type":"List",
"Value":[False, True]},
{"Name":"Blink Mode",
"Type":"List",
"Value":['Hide', 'Highlight']},
{"Name":"Density Plot Mode",
"Type":"List",
"Value":["cart", "points"]},
{"Name":"Non-Selected Plots",
'Type':'List',
'Value':['Hidden', 'Faded']}]
self.preferences = {"Cell Plot Style":'frustum',
"Min Diameter":0.0,
"Ruler Ticks":100.0,
"Blink Mode":"Hide",
"Highlight Color":(1.0, 1.0, 1.0),
"Show Point Labels":False,
"Sphere Plot Style":'Spheres',
"Always Reload Extensions":False,
"Density Plot Mode":"points",
"Line Width":1,
"Default Point Size":1,
'Non-Selected Plots':'Hidden'}
self.xm=None
self.document = None
if master:
self.xm = master
controls.insert(0, ["Selection", "Import Selection", self.impSel])
controls.insert(0, ["Selection", "Export Selection", self.expSel])
self.document = self.xm.document
controls.append(["File", "Close", lambda x: self.Destroy()])
self.fillMenus(controls)
else:
controls.append(['Display', 'Data Editor', self.launchDE])
self.fillMenus(controls)
self.stdFileMenu()
self.displayfilter=None
self.mainSizer = wx.BoxSizer(wx.VERTICAL)
self.main.SetSizer(self.mainSizer)
self.main.SetAutoLayout(True)
self.graph=CellGraph(self.main, self)
self.graph.report=self.report
self.graph.OnShiftClick=self.selectObj
self.graph.OnShiftRight=self.selectNearest
self.graph.SetCursor(wx.StockCursor(wx.CURSOR_CROSS))
self.mainSizer.Add(self.graph, 1, wx.GROW|wx.ALIGN_CENTRE|wx.ALL, 5)
self.graph.Show(True)
self.graph.SetDropTarget(self.dropLoader)
self.mainSizer.Fit(self.main)
self.SetSize(wx.Size(600,700))
for s in self.graph.global_options:
lpn="graph - %s" % (s,)
val=getattr(self.graph, s)
self.preferences[lpn]=val
self.loaddir=""
self.savedir=""
self.selected=[]
self._foundLastPoint = []
self._foundSpatialPoint = []
self.extmod=cve.CVExtMod(self)
self.extmod.makeMenus()
self.load_saved_prefs()
self.graph.rulerticks = self.preferences["Ruler Ticks"]
