Python get_entries Examples

Example #1

def get_objective_name_cziread(filename):

    czi = CziFile(filename)
    namelst = []
    valuelst = []
    # get root tree of CZI metadata (uses ElementTree)

    for elem in czi.metadata.getiterator():

        namelst.append(elem.tag)
        valuelst.append(elem.text)

    # get the channel descriptions
    try:
        ids = misc.find_index_byname(namelst, 'ObjectiveName')
        objname = misc.get_entries(valuelst, ids)
    except:
        objname = 'n.a.'

    czi.close()

Example #2

File: czitools.py Project: jjcorreao/BioFormatsRead

def get_objective_name_cziread(filename):

    czi = CziFile(filename)
    namelst = []
    valuelst = []
    # get root tree of CZI metadata (uses ElementTree)

    for elem in czi.metadata.getiterator():

        namelst.append(elem.tag)
        valuelst.append(elem.text)

    # get the channel descriptions
    try:
        ids = misc.find_index_byname(namelst, 'ObjectiveName')
        objname = misc.get_entries(valuelst, ids)
    except:
        objname = 'na'

    czi.close()

Example #3

def get_metainfo_channel_description(filename):

    try:
        czi = CziFile(filename)
        namelst = []
        valuelst = []
        # get root tree of CZI metadata (uses ElementTree)

        for elem in czi.metadata.getiterator():

            namelst.append(elem.tag)
            valuelst.append(elem.text)

        # get the channel descriptions
        ids = misc.find_index_byname(namelst, 'Description')
        chdescript = misc.get_entries(valuelst, ids)

        czi.close()

    except:
        chdescript = 'n.a.'

    return chdescript

Example #4

File: czitools.py Project: jjcorreao/BioFormatsRead

def get_metainfo_channel_description(filename):

    try:
        czi = CziFile(filename)
        namelst = []
        valuelst = []
        # get root tree of CZI metadata (uses ElementTree)

        for elem in czi.metadata.getiterator():

            namelst.append(elem.tag)
            valuelst.append(elem.text)

        # get the channel descriptions
        ids = misc.find_index_byname(namelst, 'Description')
        chdescript = misc.get_entries(valuelst, ids)

        czi.close()

    except:
        chdescript = 'na'

    return chdescript