def run(self, *args, **kwargs): args = ArgumentBuilder(formatter_class=argparse.ArgumentDefaultsHelpFormatter, description='Convert Notebook to python script') \ .add_work_dir_argument() \ .add_conf_path_argument() \ .add_docstring_conf() \ .add_force_argument() \ .add_argument('-n', '--notebook', type=str, required=True, help='The notebook to convert') \ .parse(args) self.set_log_level(args) conf = self.get_conf(args.working_directory, args.notebook, args.conf_path) if not conf.path: raise MlVToolException('Configuration file is mandatory') docstring_conf_path = args.docstring_conf or conf.docstring_conf docstring_conf = load_docstring_conf( docstring_conf_path) if docstring_conf_path else None output_script = get_script_output_path(args.notebook, conf) out_dvc_cmd = get_dvc_cmd_output_path(output_script, conf) self.check_force(args.force, [output_script, out_dvc_cmd]) export_to_script(args.notebook, output_script, conf) gen_dvc_command(output_script, out_dvc_cmd, conf, docstring_conf)
def run(self, *args, **kwargs): args = ArgumentBuilder(formatter_class=argparse.ArgumentDefaultsHelpFormatter, description='Checks all notebooks and scripts consistency.\n' 'Run the up to date checks on all notebooks from the notebook directory. ' 'Script names are deduce from the conf.') \ .add_work_dir_argument() \ .add_conf_path_argument() \ .add_path_argument('-n', '--notebooks-dir', type=str, help='Notebooks directory') \ .add_argument('-i', '--ignore', action='append', help='Notebook filename to ignore', default=[]) \ .parse(args) self.set_log_level(args) conf = self.get_conf(args.working_directory, args.notebooks_dir, args.conf_path) if not conf.path: raise MlVToolException('Configuration file is mandatory') equals = True for notebook in glob.glob(join(args.notebooks_dir, '*.ipynb')): if basename(notebook) in args.ignore: logging.info(f'Ignore notebook {notebook}') continue associated_script = get_script_output_path(notebook, conf) equals = run_consistency_check(notebook, associated_script, conf) and equals sys.exit(0 if equals else 1)
def test_should_load_conf_file(work_dir): """ Test load valid conf file """ conf_file = join(work_dir, '.mlvtools') write_conf(work_dir=work_dir, conf_path=conf_file, ignore_keys=['# No effect', "# Ignore"], script_dir='./scripts', dvc_cmd_dir='./dvc_cmd', dvc_py_cmd_name='VAR_Name', dvc_py_cmd_path='var_PATh3', dvc_meta_file_name='mETA_VAR_NaME') conf = load_conf_or_default(conf_file, working_directory=work_dir) assert conf.path.python_script_root_dir == './scripts' assert conf.path.dvc_cmd_root_dir == './dvc_cmd' assert '# No effect' in conf.ignore_keys assert '# Ignore' in conf.ignore_keys assert conf.dvc_var_python_cmd_path == 'var_PATh3' assert conf.dvc_var_python_cmd_name == 'VAR_Name' assert conf.dvc_var_meta_filename == 'mETA_VAR_NaME' script_path = join(conf.path.python_script_root_dir, 'mlvtools_pipeline_part1.py') assert get_script_output_path('./data/Pipeline Part1.ipynb', conf) == join(work_dir, script_path) dvc_cmd_path = join(conf.path.dvc_cmd_root_dir, 'pipeline_part1_dvc') assert get_dvc_cmd_output_path('./data/pipeline_part1.py', conf) == join(work_dir, dvc_cmd_path)
def run(self, *args, **kwargs): args = ArgumentBuilder(formatter_class=argparse.ArgumentDefaultsHelpFormatter, description='Convert Notebook to python script') \ .add_work_dir_argument() \ .add_conf_path_argument() \ .add_force_argument() \ .add_path_argument('-n', '--notebook', type=str, required=True, help='The notebook to convert') \ .add_path_argument('-o', '--output', type=str, help='The Python script output path') \ .parse(args) self.set_log_level(args) conf = self.get_conf(args.working_directory, args.notebook, args.conf_path) if not conf.path and not args.output: raise MlVToolException( 'Parameter --output is mandatory if no conf provided') output = args.output or get_script_output_path(args.notebook, conf) self.check_force(args.force, [output]) export_to_script(args.notebook, output, conf)