def train(self, epoch, draw_graph=False):
print("Start the Cross validation for",
self.train_collection.get_n_folds(), "folds")
temp_dir = tempfile.mkdtemp()
try:
# save model init state
save_model_weights(os.path.join(temp_dir, "temp_weights.h5"),
self.model)
best_test_scores = []
for i, collections in enumerate(self.train_collection.generator()):
print("Prepare FOLD", i)
train_collection, test_collection = collections
# show baseline metrics over the previous ranking order
pre_metrics = test_collection.evaluate_pre_rerank()
print("Evaluation of the original ranking order")
for n, m in pre_metrics:
print(n, m)
# reset all the states
set_random_seed()
K.clear_session()
# load model init state
load_model_weights(os.path.join(temp_dir, "temp_weights.h5"),
self.model)
self.wandb_config["name"] = "Fold_0" + str(
i) + "_" + self.wandb_config["name"]
# create evaluation callback
if self.wandb_config is not None:
wandb_val_logger = WandBValidationLogger(
wandb_args=self.wandb_config,
steps_per_epoch=train_collection.get_steps(),
validation_collection=test_collection)
else:
raise KeyError("Please use wandb for now!!!")
best_test_scores.append(wandb_val_logger.current_best)
callbacks = [wandb_val_logger] + self.callbacks
print("Train and test FOLD", i)
pairwise_training = PairwiseTraining(
model=self.model,
train_collection=train_collection,
loss=self.loss,
optimizer=self.optimizer,
callbacks=callbacks)
pairwise_training.train(epoch, draw_graph=draw_graph)
x_score = sum(best_test_scores) / len(best_test_scores)
print("X validation best score:", x_score)
wandb_val_logger.wandb.run.summary[
"best_xval_" + wandb_val_logger.comparison_metric] = x_score
except Exception as e:
raise e # maybe handle the exception in the future
finally:
# always remove the temp directory
print("Remove {}".format(temp_dir))
shutil.rmtree(temp_dir)
from mmnrm.utils import set_random_seed
from nir.embeddings import FastText, Word2Vec
set_random_seed()
import io
from nir.tokenizers import Regex, BioCleanTokenizer, BioCleanTokenizer2
import numpy as np
import math
import os
import json
import tensorflow as tf
from tensorflow.keras import backend as K
from mmnrm.dataset import TrainCollectionV2, TestCollectionV2, sentence_splitter_builderV2, TrainPairwiseCollection
from mmnrm.modelsv2 import deep_rank
from mmnrm.callbacks import TriangularLR, WandBValidationLogger, LearningRateScheduler
from mmnrm.training import PairwiseTraining, pairwise_cross_entropy
from mmnrm.utils import merge_dicts, load_model
def main():
min_freq = 5
mun_itter = 15
emb_size = 200
use_triangularLR = False
use_step_decay = False