Python ungzip_data Examples

Example #1

def _call_sequence_file(t):
    '''Call function for hadoop sequence files'''
    # TODO: check if all sequence files are gzipped
    data = default_api.ungzip_data(t[1])
    unpack = msgpack.unpackb(data.read(), raw=False)
    decoder = MmtfStructure(unpack)
    return (str(t[0]), decoder)

Example #2

File: MmtfReader.py Project: TPLink32/mmtf-pyspark

def call_sequence_file_gzip(t):
    '''
    Call function for hadoop sequence files
    '''
    data = default_api.ungzip_data(t[1])
    unpack = msgpack.unpackb(data.read())
    decoder = mmtfStructure(unpack)
    return (str(t[0]), decoder)

Example #3

File: codec_tests.py Project: zfalls/mmtf-python

 def test_gzip_open(self):
     ungzip_data(open("mmtf/tests/testdatastore/4CUP.mmtf.gz", "rb").read())

Example #4

File: codec_tests.py Project: pwrose/mmtf-python

 def test_gzip_open(self):
     with open("mmtf/tests/testdatastore/4CUP.mmtf.gz","rb") as fh:
         ungzip_data(fh.read())

Example #5

File: codec_tests.py Project: peterjc/mmtf-python

 def test_gzip_open(self):
     ungzip_data(open("mmtf/tests/testdatastore/4CUP.mmtf.gz","rb").read())