def test_pc():
pc = mu.pc(pred_ui, obs)
assert pc == 100
columns=["lower", "upper"],
index=model.input_data.index,
)
obs = pandas.DataFrame(model.vars[data_type]["p_obs"].value, columns=["value"], index=model.input_data.index)
# subset only test data
pred_test = pred.ix[test_ix]
obs_test = obs.ix[test_ix]
pred_ui_test = pred_ui.ix[test_ix]
# record statistics for test data
output["bias_" + rate_type] = mu.bias(pred_test, obs_test)
output["rmse_" + rate_type] = mu.rmse(pred_test, obs_test)
output["mae_" + rate_type] = mu.mae(pred_test, obs_test)
output["mare_" + rate_type] = mu.mare(pred_test, obs_test)
output["pc_" + rate_type] = mu.pc(pred_ui_test, obs_test)
output["time_" + rate_type] = elapsed
# save information
output.to_csv("/clustertmp/dismod/model_comparison_" + str(model_num) + rate_type + str(replicate) + ".csv")
# create and save conversion plots
dismod3.graphics.plot_acorr(model)
pl.savefig("/clustertmp/dismod/model_comparison_" + str(model_num) + rate_type + str(replicate) + "acorr.png")
dismod3.graphics.plot_trace(model)
pl.savefig("/clustertmp/dismod/model_comparison_" + str(model_num) + rate_type + str(replicate) + "trace.png")
# save statistic types (only for 1st replicate)
if replicate == 0:
model_stats = pandas.DataFrame(["seed", "bias_", "rmse_", "mae_", "mare_", "pc_", "time_"], columns=["stats"])
model_stats.to_csv("/home/j/Project/Models/dismodmr_rate_validation/validity/model_stats.csv")
def test_pc_fail():
pred_ui.ix[0,'upper'] = 0 # change UI interval from [-1,1] to [-1,0]
# now 1 of 10 observations are outside of the predicted UI bounds
pc = mu.pc(pred_ui, obs)
assert pc == 90