def get_filter_by_sources(sources):
filters = and_(((Mutation.get_relationship(source).any()
if are_details_managed(source) else
Mutation.get_relationship(source).has())
for source in sources))
return filters
def __init__(self):
for source_model in source_manager.all:
# dirty trick: 1KGenomes is not a valid name in Python
name = 'mutations_' + source_model.name.replace('1', 'T')
def muts_counter(_self):
return self.count_by_sources([source_model])
self.register(counter(muts_counter, name=name))
for source_model in filter(lambda model: are_details_managed(model),
source_manager.all):
name = f'mutations_{source_model.name}_annotations'
self.register(models_counter(source_model, name=name))
def __init__(self):
for model in Mutation.source_specific_data:
# dirty trick: 1KGenomes is not a valid name in Python
name = 'mutations_' + model.name.replace('1', 'T')
def muts_counter(self, model=model):
return self.count_mutations(model)
muts_counter.to_be_registered = True
self.__dict__[name] = muts_counter
for model in filter(lambda model: are_details_managed(model),
Mutation.source_specific_data):
name = 'mutations_' + model.name + '_annotations'
self.__dict__[name] = models_counter(model)
for name, method in get_methods(self):
if hasattr(method, 'to_be_registered'):
self.__dict__[name] = counter(method, name)