def ko_rclass2name(ko_rclasses):
kegg_api = kegg()
ko_rclass2name_d = {}
response = kegg_api.loop(func="list", entries=list(ko_rclasses))
for row in [i for i in response.split("\n") if i]:
rclass, name = row.split("\t")
ko_rclass2name_d[rclass] = name
return ko_rclass2name_d
def ko_module2name(ko_modules):
kegg_api = kegg()
ko_module2name_d = {}
response = kegg_api.loop(func="list", entries=list(ko_modules))
for row in [i for i in response.split("\n") if i]:
module, name = row.split("\t")
module = re.sub(r'^md:', "", module)
ko_module2name_d[module] = name
return ko_module2name_d
def ko_reaction2name(ko_reactions):
kegg_api = kegg()
ko_reaction2name_d = {}
response = kegg_api.loop(func="list", entries=list(ko_reactions))
for row in [i for i in response.split("\n") if i]:
reaction, name = row.split("\t")
reaction = re.sub(r'^rn:', "", reaction)
ko_reaction2name_d[reaction] = name
return ko_reaction2name_d
def ko_path2name(ko_paths):
kegg_api = kegg()
ko_path2name_d = {}
response = kegg_api.loop(func="list", entries=list(ko_paths))
for row in [i for i in response.split("\n") if i]:
path, name = row.split("\t")
path = re.sub(r'^path:', '', path)
ko_path2name_d[path] = name
return ko_path2name_d
def brite2name(ko_brs):
kegg_api = kegg()
brite2name_d = {}
response = kegg_api.loop(func="list",
entries=[f"br:{br}" for br in list(ko_brs)])
for row in [i for i in response.split("\n") if i]:
br, name = row.split("\t")
br = re.sub(r"^br:", "", br)
brite2name_d[br] = name
return brite2name_d
def ko2name(ko_ids):
kegg_api = kegg()
ko2name_d = {}
response = kegg_api.loop(func="list", entries=list(ko_ids))
for row in [i for i in response.split("\n") if i]:
ko_id, names = row.split("\t")
name = re.sub(r'\[EC:.{1,3}\..{1,3}\..{1,3}\..{1,3}]', "",
';'.join(names.split(";")[1:])).strip()
ko2name_d[ko_id] = name
return ko2name_d