def __init__(self, criteria_sets=None, vertex_tags=None):
"""
Arguments: see :class:`molmod.graphs.CustomPattern`
"""
if vertex_tags is None:
vertex_tags = {}
pattern_graph = Graph([(0, 1), (0, 2), (0, 3), (0, 4)])
CustomPattern.__init__(self, pattern_graph, criteria_sets, vertex_tags)
def __init__(self, criteria_sets=None, vertex_tags=None):
"""
Arguments: see :class:`molmod.graphs.CustomPattern`
"""
if vertex_tags is None:
vertex_tags = {}
pattern_graph = Graph([(0, 1), (0, 2), (0, 3), (0, 4)])
CustomPattern.__init__(self, pattern_graph, criteria_sets, vertex_tags)
def __init__(self, size, criteria_sets=None, vertex_tags=None, strong=False):
"""
Argument:
| ``size`` -- the size of the ring
"""
if vertex_tags is None:
vertex_tags = {}
self.size = size
self.strong = strong
pattern_graph = Graph([(i, (i+1)%size) for i in xrange(size)])
CustomPattern.__init__(self, pattern_graph, criteria_sets, vertex_tags)
def __init__(self, size, criteria_sets=None, vertex_tags=None, strong=False):
"""
Argument:
| ``size`` -- the size of the ring
"""
if vertex_tags is None:
vertex_tags = {}
self.size = size
self.strong = strong
pattern_graph = Graph([(i, (i+1)%size) for i in range(size)])
CustomPattern.__init__(self, pattern_graph, criteria_sets, vertex_tags)
def check_next_match(self, match, new_relations, subject_graph, one_match):
"""Check if the (onset for a) match can be a valid (part of a) ring"""
if not CustomPattern.check_next_match(self, match, new_relations, subject_graph, one_match):
return False
if self.strong:
# can this ever become a strong ring?
vertex1_start = match.forward[self.pattern_graph.central_vertex]
for vertex1 in new_relations.itervalues():
paths = list(subject_graph.iter_shortest_paths(vertex1, vertex1_start))
if self.size % 2 == 0 and len(match) == self.size:
if len(paths) != 2:
#print "NRingPattern.check_next_match: not strong a.1"
return False
for path in paths:
if len(path) != len(match)/2+1:
#print "NRingPattern.check_next_match: not strong a.2"
return False
else:
if len(paths) != 1:
#print "NRingPattern.check_next_match: not strong b.1"
return False
if len(paths[0]) != (len(match)+1)/2:
#print "NRingPattern.check_next_match: not strong b.2"
return False
#print "RingPattern.check_next_match: no remarks"
return True
def check_next_match(self, match, new_relations, subject_graph, one_match):
"""Check if the (onset for a) match can be a valid (part of a) ring"""
if not CustomPattern.check_next_match(self, match, new_relations,
subject_graph, one_match):
return False
if self.strong:
# can this ever become a strong ring?
vertex1_start = match.forward[self.pattern_graph.central_vertex]
for vertex1 in new_relations.values():
paths = list(
subject_graph.iter_shortest_paths(vertex1, vertex1_start))
if self.size % 2 == 0 and len(match) == self.size:
if len(paths) != 2:
#print "NRingPattern.check_next_match: not strong a.1"
return False
for path in paths:
if len(path) != len(match) // 2 + 1:
#print "NRingPattern.check_next_match: not strong a.2"
return False
else:
if len(paths) != 1:
#print "NRingPattern.check_next_match: not strong b.1"
return False
if len(paths[0]) != (len(match) + 1) // 2:
#print "NRingPattern.check_next_match: not strong b.2"
return False
#print "RingPattern.check_next_match: no remarks"
return True
def complete(self, match, subject_graph):
"""Check the completeness of the ring match"""
if not CustomPattern.complete(self, match, subject_graph):
return False
if self.strong:
# If the ring is not strong, return False
if self.size % 2 == 0:
# even ring
for i in range(self.size // 2):
vertex1_start = match.forward[i]
vertex1_stop = match.forward[(i + self.size // 2) %
self.size]
paths = list(
subject_graph.iter_shortest_paths(
vertex1_start, vertex1_stop))
if len(paths) != 2:
#print "Even ring must have two paths between opposite vertices"
return False
for path in paths:
if len(path) != self.size // 2 + 1:
#print "Paths between opposite vertices must half the size of the ring+1"
return False
else:
# odd ring
for i in range(self.size // 2 + 1):
vertex1_start = match.forward[i]
vertex1_stop = match.forward[(i + self.size // 2) %
self.size]
paths = list(
subject_graph.iter_shortest_paths(
vertex1_start, vertex1_stop))
if len(paths) > 1:
return False
if len(paths[0]) != self.size // 2 + 1:
return False
vertex1_stop = match.forward[(i + self.size // 2 + 1) %
self.size]
paths = list(
subject_graph.iter_shortest_paths(
vertex1_start, vertex1_stop))
if len(paths) > 1:
return False
if len(paths[0]) != self.size // 2 + 1:
return False
return True
def complete(self, match, subject_graph):
"""Check the completeness of the ring match"""
if not CustomPattern.complete(self, match, subject_graph):
return False
if self.strong:
# If the ring is not strong, return False
if self.size % 2 == 0:
# even ring
for i in xrange(self.size/2):
vertex1_start = match.forward[i]
vertex1_stop = match.forward[i+self.size/2]
paths = list(subject_graph.iter_shortest_paths(vertex1_start, vertex1_stop))
if len(paths) != 2:
#print "Even ring must have two paths between opposite vertices"
return False
for path in paths:
if len(path) != self.size/2+1:
#print "Paths between opposite vertices must half the size of the ring+1"
return False
else:
# odd ring
for i in xrange(self.size/2+1):
vertex1_start = match.forward[i]
vertex1_stop = match.forward[i+self.size/2]
paths = list(subject_graph.iter_shortest_paths(vertex1_start, vertex1_stop))
if len(paths) > 1:
return False
if len(paths[0]) != self.size/2+1:
return False
vertex1_stop = match.forward[i+self.size/2+1]
paths = list(subject_graph.iter_shortest_paths(vertex1_start, vertex1_stop))
if len(paths) > 1:
return False
if len(paths[0]) != self.size/2+1:
return False
return True