def main(args):
global cable
dt = args['dt']
makeCable(args)
setupDUT( dt )
table0 = utils.recordAt( '/table0', cable[0], 'vm')
table1 = utils.recordAt( '/table1', cable[-1], 'vm')
simulate( args['run_time'], dt )
utils.plotTables( [ table0, table1 ], file = args['output'], xscale = dt )
def main():
utils.parser
nml.loadNeuroML_L123('./two_cells_nml_1.8/two_cells.nml')
#mumbl.loadMumbl("./two_cells_nml_1.8/mumbl.xml")
table1 = utils.recordTarget('/tableA', '/cells/purkinjeGroup_0/Dend_37_41', 'vm')
table2 = utils.recordTarget('/tableB', '/cells/granuleGroup_0/Soma_0', 'vm')
moose.setClock(0, 5e-6)
moose.useClock(0, '/##', 'process')
moose.useClock(0, '/##', 'init')
moose.reinit()
utils.run(0.1, verify=True)
graphviz.writeGraphviz(__file__+".dot", ignore='/library')
utils.plotTables([table1, table2])
def main():
utils.parser
nml.loadNeuroML_L123('./two_cells_nml_1.8/two_cells.nml')
#mumbl.loadMumbl("./two_cells_nml_1.8/mumbl.xml")
table1 = utils.recordTarget('/tableA', '/cells/purkinjeGroup_0/Dend_37_41',
'vm')
table2 = utils.recordTarget('/tableB', '/cells/granuleGroup_0/Soma_0',
'vm')
moose.setClock(0, 5e-6)
moose.useClock(0, '/##', 'process')
moose.useClock(0, '/##', 'init')
moose.reinit()
utils.run(0.1, verify=True)
graphviz.writeGraphviz(__file__ + ".dot", ignore='/library')
utils.plotTables([table1, table2])
def main(args):
cableLength = float(args['length'])
compNons = int(args['ncomp'])
compartmentSize = cableLength / compNons
cable = PasiveCable(args)
first = 0
last = int(int(args['x']) / compartmentSize) - 1
table1 = utils.recordTarget('/data/table1', cable.cable[first].mc_, 'vm')
table2 = utils.recordTarget('/data/table2', cable.cable[last].mc_, 'vm')
simTime = args['run_time']
sim_dt = args['dt']
outputFile = args['output']
cable.simulate(simTime, sim_dt)
utils.plotTables([table1, table2], xscale=sim_dt, file=outputFile)
utils.saveTables([table1, table2],
xscale=sim_dt,
file='data/rallpack2_moose.dat')
def main( args ):
cableLength = float(args['length'])
compNons = int(args['ncomp'])
compartmentSize = cableLength / compNons
cable = PasiveCable( args )
first = 0
last = int(int(args['x']) / compartmentSize) - 1
table1 = utils.recordTarget('/data/table1', cable.cable[first].mc_, 'vm' )
table2 = utils.recordTarget('/data/table2', cable.cable[last].mc_, 'vm' )
simTime = args['run_time']
sim_dt = args['dt']
outputFile = args['output']
cable.simulate( simTime, sim_dt )
utils.plotTables([table1, table2]
, xscale = sim_dt
, file = outputFile
)
utils.saveTables( [table1, table2 ]
, xscale = sim_dt
, file = 'data/rallpack2_moose.dat'
)