def _runSlot(self):
if moose.isRunning():
print("Stopping simulation in progress ...")
moose.stop()
self._runtime = self.getFloatInput(self._runTimeEdit, self._runTimeLabel.text())
self._overlayPlots(self._overlayAction.isChecked())
self._simdt = self.getFloatInput(self._simTimeStepEdit, self._simTimeStepLabel.text())
clampMode = None
singlePulse = True
if self._electronicsTab.currentWidget() == self._vClampCtrlBox:
clampMode = "vclamp"
baseLevel = self.getFloatInput(self._holdingVEdit, self._holdingVLabel.text())
firstDelay = self.getFloatInput(self._holdingTimeEdit, self._holdingTimeLabel.text())
firstWidth = self.getFloatInput(self._prePulseTimeEdit, self._prePulseTimeLabel.text())
firstLevel = self.getFloatInput(self._prePulseVEdit, self._prePulseVLabel.text())
secondDelay = firstWidth
secondWidth = self.getFloatInput(self._clampTimeEdit, self._clampTimeLabel.text())
secondLevel = self.getFloatInput(self._clampVEdit, self._clampVLabel.text())
if not self._autoscaleAction.isChecked():
self._im_axes.set_ylim(-10.0, 10.0)
else:
clampMode = "iclamp"
baseLevel = self.getFloatInput(self._baseCurrentEdit, self._baseCurrentLabel.text())
firstDelay = self.getFloatInput(self._firstDelayEdit, self._firstDelayLabel.text())
firstWidth = self.getFloatInput(self._firstPulseWidthEdit, self._firstPulseWidthLabel.text())
firstLevel = self.getFloatInput(self._firstPulseEdit, self._firstPulseLabel.text())
secondDelay = self.getFloatInput(self._secondDelayEdit, self._secondDelayLabel.text())
secondLevel = self.getFloatInput(self._secondPulseEdit, self._secondPulseLabel.text())
secondWidth = self.getFloatInput(self._secondPulseWidthEdit, self._secondPulseWidthLabel.text())
singlePulse = self._pulseMode.currentIndex() == 0
if not self._autoscaleAction.isChecked():
self._im_axes.set_ylim(-0.4, 0.4)
self.squid_setup.clamp_ckt.configure_pulses(
baseLevel=baseLevel,
firstDelay=firstDelay,
firstWidth=firstWidth,
firstLevel=firstLevel,
secondDelay=secondDelay,
secondWidth=secondWidth,
secondLevel=secondLevel,
singlePulse=singlePulse,
)
if self._kConductanceToggle.isChecked():
self.squid_setup.squid_axon.specific_gK = 0.0
else:
self.squid_setup.squid_axon.specific_gK = SquidAxon.defaults["specific_gK"]
if self._naConductanceToggle.isChecked():
self.squid_setup.squid_axon.specific_gNa = 0.0
else:
self.squid_setup.squid_axon.specific_gNa = SquidAxon.defaults["specific_gNa"]
self.squid_setup.squid_axon.celsius = self.getFloatInput(self._temperatureEdit, self._temperatureLabel.text())
self.squid_setup.squid_axon.K_out = self.getFloatInput(self._kOutEdit, self._kOutLabel.text())
self.squid_setup.squid_axon.Na_out = self.getFloatInput(self._naOutEdit, self._naOutLabel.text())
self.squid_setup.squid_axon.K_in = self.getFloatInput(self._kInEdit, self._kInLabel.text())
self.squid_setup.squid_axon.Na_in = self.getFloatInput(self._naInEdit, self._naInLabel.text())
self.squid_setup.squid_axon.updateEk()
self.squid_setup.schedule(self._simdt, self._plotdt, clampMode)
# The following line is for use with Qthread
self.squid_setup.run(self._runtime)
self._updateAllPlots()
def _runSlot(self):
if moose.isRunning():
print('Stopping simulation in progress ...')
moose.stop()
self._runtime = self.getFloatInput(self._runTimeEdit, self._runTimeLabel.text())
self._overlayPlots(self._overlayAction.isChecked())
self._simdt = self.getFloatInput(self._simTimeStepEdit, self._simTimeStepLabel.text())
clampMode = None
singlePulse = True
if self._electronicsTab.currentWidget() == self._vClampCtrlBox:
clampMode = 'vclamp'
baseLevel = self.getFloatInput(self._holdingVEdit, self._holdingVLabel.text())
firstDelay = self.getFloatInput(self._holdingTimeEdit, self._holdingTimeLabel.text())
firstWidth = self.getFloatInput(self._prePulseTimeEdit, self._prePulseTimeLabel.text())
firstLevel = self.getFloatInput(self._prePulseVEdit, self._prePulseVLabel.text())
secondDelay = firstWidth
secondWidth = self.getFloatInput(self._clampTimeEdit, self._clampTimeLabel.text())
secondLevel = self.getFloatInput(self._clampVEdit, self._clampVLabel.text())
if not self._autoscaleAction.isChecked():
self._im_axes.set_ylim(-10.0, 10.0)
else:
clampMode = 'iclamp'
baseLevel = self.getFloatInput(self._baseCurrentEdit, self._baseCurrentLabel.text())
firstDelay = self.getFloatInput(self._firstDelayEdit, self._firstDelayLabel.text())
firstWidth = self.getFloatInput(self._firstPulseWidthEdit, self._firstPulseWidthLabel.text())
firstLevel = self.getFloatInput(self._firstPulseEdit, self._firstPulseLabel.text())
secondDelay = self.getFloatInput(self._secondDelayEdit, self._secondDelayLabel.text())
secondLevel = self.getFloatInput(self._secondPulseEdit, self._secondPulseLabel.text())
secondWidth = self.getFloatInput(self._secondPulseWidthEdit, self._secondPulseWidthLabel.text())
singlePulse = (self._pulseMode.currentIndex() == 0)
if not self._autoscaleAction.isChecked():
self._im_axes.set_ylim(-0.4, 0.4)
self.squid_setup.clamp_ckt.configure_pulses(baseLevel=baseLevel,
firstDelay=firstDelay,
firstWidth=firstWidth,
firstLevel=firstLevel,
secondDelay=secondDelay,
secondWidth=secondWidth,
secondLevel=secondLevel,
singlePulse=singlePulse)
if self._kConductanceToggle.isChecked():
self.squid_setup.squid_axon.specific_gK = 0.0
else:
self.squid_setup.squid_axon.specific_gK = SquidAxon.defaults['specific_gK']
if self._naConductanceToggle.isChecked():
self.squid_setup.squid_axon.specific_gNa = 0.0
else:
self.squid_setup.squid_axon.specific_gNa = SquidAxon.defaults['specific_gNa']
self.squid_setup.squid_axon.celsius = self.getFloatInput(self._temperatureEdit, self._temperatureLabel.text())
self.squid_setup.squid_axon.K_out = self.getFloatInput(self._kOutEdit, self._kOutLabel.text())
self.squid_setup.squid_axon.Na_out = self.getFloatInput(self._naOutEdit, self._naOutLabel.text())
self.squid_setup.squid_axon.K_in = self.getFloatInput(self._kInEdit, self._kInLabel.text())
self.squid_setup.squid_axon.Na_in = self.getFloatInput(self._naInEdit, self._naInLabel.text())
self.squid_setup.squid_axon.updateEk()
self.squid_setup.schedule(self._simdt, self._plotdt, clampMode)
# The following line is for use with Qthread
self.squid_setup.run(self._runtime)
self._updateAllPlots()
def pauseSimulation(self):
moose.stop()
def pauseSimulation(self):
moose.stop()
