class PlotRMSMaps(object):
"""
plots the RMS as (data-model)/(error) in map view for all components
of the data file. Gets this infomration from the .res file output
by ModEM.
Arguments:
------------------
**residual_fn** : string
full path to .res file
=================== =======================================================
Attributes Description
=================== =======================================================
fig matplotlib.figure instance for a single plot
fig_dpi dots-per-inch resolution of figure *default* is 200
fig_num number of fig instance *default* is 1
fig_size size of figure in inches [width, height]
*default* is [7,6]
font_size font size of tick labels, axis labels are +2
*default* is 8
marker marker style for station rms,
see matplotlib.line for options,
*default* is 's' --> square
marker_size size of marker in points. *default* is 10
pad_x padding in map units from edge of the axis to stations
at the extremeties in longitude.
*default* is 1/2 tick_locator
pad_y padding in map units from edge of the axis to stations
at the extremeties in latitude.
*default* is 1/2 tick_locator
period_index index of the period you want to plot according to
self.residual.period_list. *default* is 1
plot_yn [ 'y' | 'n' ] default is 'y' to plot on instantiation
plot_z_list internal variable for plotting
residual modem.Data instance that holds all the information
from the residual_fn given
residual_fn full path to .res file
rms_cmap matplotlib.cm object for coloring the markers
rms_cmap_dict dictionary of color values for rms_cmap
rms_max maximum rms to plot. *default* is 5.0
rms_min minimum rms to plot. *default* is 1.0
save_path path to save figures to. *default* is directory of
residual_fn
subplot_bottom spacing from axis to bottom of figure canvas.
*default* is .1
subplot_hspace horizontal spacing between subplots.
*default* is .1
subplot_left spacing from axis to left of figure canvas.
*default* is .1
subplot_right spacing from axis to right of figure canvas.
*default* is .9
subplot_top spacing from axis to top of figure canvas.
*default* is .95
subplot_vspace vertical spacing between subplots.
*default* is .01
tick_locator increment for x and y major ticks. *default* is
limits/5
bimg path to a geotiff to display as background of
plotted maps
bimg_band band of bimg to plot. *default* is None, which
will plot all available bands
bimg_cmap cmap for bimg. *default* is 'viridis'. Ignored
if bimg is RBG/A
=================== =======================================================
=================== =======================================================
Methods Description
=================== =======================================================
plot plot rms maps for a single period
plot_loop loop over all frequencies and save figures to save_path
read_residual_fn read in residual_fn
redraw_plot after updating attributes call redraw_plot to
well redraw the plot
save_figure save the figure to a file
=================== =======================================================
:Example: ::
>>> import mtpy.modeling.modem as modem
>>> rms_plot = PlotRMSMaps(r"/home/ModEM/Inv1/mb_NLCG_030.res")
>>> # change some attributes
>>> rms_plot.fig_size = [6, 4]
>>> rms_plot.rms_max = 3
>>> rms_plot.redraw_plot()
>>> # happy with the look now loop over all periods
>>> rms_plot.plot_loop()
"""
def __init__(self, residual_fn, **kwargs):
self._residual_fn = None
self.residual = None
self.residual_fn = residual_fn
self.model_epsg = kwargs.pop('model_epsg', None)
self.read_residual_fn()
self.save_path = kwargs.pop('save_path',
os.path.dirname(self.residual_fn))
self.period = kwargs.pop('period', None)
if self.period is not None:
# Get period index closest to provided period
index = np.argmin(np.fabs(self.residual.period_list - self.period))
_logger.info(
"Plotting nearest available period ({}s) for selected period ({}s)"
.format(self.residual.period_list[index], self.period))
self.period_index = index
else:
self.period_index = kwargs.pop('period_index', 0)
self.plot_elements = kwargs.pop('plot_elements', 'both')
self.subplot_left = kwargs.pop('subplot_left', .1)
self.subplot_right = kwargs.pop('subplot_right', .9)
self.subplot_top = kwargs.pop('subplot_top', .95)
self.subplot_bottom = kwargs.pop('subplot_bottom', .1)
self.subplot_hspace = kwargs.pop('subplot_hspace', .1)
self.subplot_vspace = kwargs.pop('subplot_vspace', .01)
self.font_size = kwargs.pop('font_size', 8)
self.fig = None
self.fig_size = kwargs.pop('fig_size', [7.75, 6.75])
self.fig_dpi = kwargs.pop('fig_dpi', 200)
self.fig_num = kwargs.pop('fig_num', 1)
self.font_dict = {'size': self.font_size + 2, 'weight': 'bold'}
self.marker = kwargs.pop('marker', 's')
self.marker_size = kwargs.pop('marker_size', 10)
self.rms_max = kwargs.pop('rms_max', 5)
self.rms_min = kwargs.pop('rms_min', 0)
self.tick_locator = kwargs.pop('tick_locator', None)
self.pad_x = kwargs.pop('pad_x', None)
self.pad_y = kwargs.pop('pad_y', None)
self.plot_yn = kwargs.pop('plot_yn', 'y')
self.bimg = kwargs.pop('bimg', None)
if self.bimg and self.model_epsg is None:
_logger.warning(
"You have provided a geotiff as a background image but model_epsg is "
"not set. It's assumed that the CRS of the model and the CRS of the "
"geotiff are the same. If this is not the case, please provide "
"model_epsg to PlotRMSMaps.")
self.bimg_band = kwargs.pop('bimg_band', None)
self.bimg_cmap = kwargs.pop('bimg_cmap', 'viridis')
# colormap for rms, goes white to black from 0 to rms max and
# red below 1 to show where the data is being over fit
self.rms_cmap_dict = {
'red': ((0.0, 1.0, 1.0), (0.2, 1.0, 1.0), (1.0, 0.0, 0.0)),
'green': ((0.0, 0.0, 0.0), (0.2, 1.0, 1.0), (1.0, 0.0, 0.0)),
'blue': ((0.0, 0.0, 0.0), (0.2, 1.0, 1.0), (1.0, 0.0, 0.0))
}
self.rms_cmap = None
if 'rms_cmap' in list(kwargs.keys()):
# check if it is a valid matplotlib color stretch
if kwargs['rms_cmap'] in dir(cm):
self.rms_cmap = cm.get_cmap(kwargs['rms_cmap'])
else:
print("provided rms_cmap invalid, using default colormap")
if self.rms_cmap is None:
self.rms_cmap = colors.LinearSegmentedColormap(
'rms_cmap', self.rms_cmap_dict, 256)
if self.plot_elements == 'both':
self.plot_z_list = [{
'label': r'$Z_{xx}$',
'index': (0, 0),
'plot_num': 1
}, {
'label': r'$Z_{xy}$',
'index': (0, 1),
'plot_num': 2
}, {
'label': r'$Z_{yx}$',
'index': (1, 0),
'plot_num': 3
}, {
'label': r'$Z_{yy}$',
'index': (1, 1),
'plot_num': 4
}, {
'label': r'$T_{x}$',
'index': (0, 0),
'plot_num': 5
}, {
'label': r'$T_{y}$',
'index': (0, 1),
'plot_num': 6
}]
elif self.plot_elements == 'impedance':
self.plot_z_list = [{
'label': r'$Z_{xx}$',
'index': (0, 0),
'plot_num': 1
}, {
'label': r'$Z_{xy}$',
'index': (0, 1),
'plot_num': 2
}, {
'label': r'$Z_{yx}$',
'index': (1, 0),
'plot_num': 3
}, {
'label': r'$Z_{yy}$',
'index': (1, 1),
'plot_num': 4
}]
elif self.plot_elements == 'tippers':
self.plot_z_list = [{
'label': r'$T_{x}$',
'index': (0, 0),
'plot_num': 1
}, {
'label': r'$T_{y}$',
'index': (0, 1),
'plot_num': 2
}]
else:
raise ValueError(
"'plot_elements' value '{}' is not recognised. Please set "
"'plot_elements' to 'impedance', 'tippers' or 'both'.")
if self.plot_yn == 'y':
self.plot()
def _fig_title(self, font_size, font_weight):
if self.period_index == 'all':
title = 'All periods'
else:
title = 'period = {0:.5g} (s)'.format(
self.residual.period_list[self.period_index])
self.fig.suptitle(title,
fontdict={
'size': font_size,
'weight': font_weight
})
def _calculate_rms(self, plot_dict):
ii = plot_dict['index'][0]
jj = plot_dict['index'][1]
rms = np.zeros(self.residual.residual_array.shape[0])
self.residual.get_rms()
if plot_dict['label'].startswith('$Z'):
rms = self.residual.rms_array[
'rms_z_component_period'][:, self.period_index, ii, jj]
elif plot_dict['label'].startswith('$T'):
rms = self.residual.rms_array[
'rms_tip_component_period'][:, self.period_index, ii, jj]
# for ridx in range(len(self.residual.residual_array)):
# if self.period_index == 'all':
# r_arr = self.residual.rms_array[ridx]
# if plot_dict['label'].startswith('$Z'):
# rms[ridx] = r_arr['rms_z']
# else:
# rms[ridx] = r_arr['rms_tip']
# else:
# r_arr = self.residual.residual_array[ridx]
# # calulate the rms self.residual/error
# if plot_dict['label'].startswith('$Z'):
# rms[ridx] = r_arr['z'][self.period_index, ii, jj].__abs__() / \
# r_arr['z_err'][self.period_index, ii, jj].real
# else:
# rms[ridx] = r_arr['tip'][self.period_index, ii, jj].__abs__() / \
# r_arr['tip_err'][self.period_index, ii, jj].real
filt = np.nan_to_num(rms).astype(bool)
if len(rms[filt]) == 0:
_logger.warning("No RMS available for component {}".format(
self._normalize_label(plot_dict['label'])))
return rms, filt
@staticmethod
def _normalize_label(label):
return label.replace('$', '').replace('{',
'').replace('}',
'').replace('_', '')
def read_residual_fn(self):
if self.residual is None:
self.residual = Residual(residual_fn=self.residual_fn,
model_epsg=self.model_epsg)
self.residual.read_residual_file()
self.residual.get_rms()
else:
pass
def create_shapefiles(self, dst_epsg, save_path=None):
"""
Creates RMS map elements as shapefiles which can displayed in a
GIS viewer. Intended to be called as part of the 'plot'
function.
The points to plot defined by `lons` and `lats` are the centre
of the rectangular markers.
If `model_epsg` hasn't been set on class, then 4326 is assumed.
Parameters
----------
dst_epsg : int
EPSG code of the CRS that Shapefiles will be projected to.
Make this the same as the CRS of the geotiff you intend to
display on.
marker_width : float
Radius of the circular markers. Units are defined by
`model_epsg`.
"""
if save_path is None:
save_path = self.save_path
lon = self.residual.residual_array['lon']
lat = self.residual.residual_array['lat']
if self.model_epsg is None:
_logger.warning(
"model_epsg has not been provided. Model EPSG is assumed to be 4326. "
"If this is not correct, please provide model_epsg to PlotRMSMaps. "
"Otherwise, shapefiles may have projection errors.")
src_epsg = 4326
else:
src_epsg = self.model_epsg
src_epsg = {'init': 'epsg:{}'.format(src_epsg)}
for p_dict in self.plot_z_list:
rms, _ = self._calculate_rms(p_dict)
markers = []
for x, y in zip(lon, lat):
markers.append(Point(x, y))
df = gpd.GeoDataFrame({
'lon': lon,
'lat': lat,
'rms': rms
},
crs=src_epsg,
geometry=markers)
df.to_crs(epsg=dst_epsg, inplace=True)
if self.period_index == 'all':
period = 'all'
else:
period = self.residual.period_list[self.period_index]
filename = '{}_EPSG_{}_Period_{}.shp'.format(
self._normalize_label(p_dict['label']), dst_epsg, period)
directory = os.path.join(
self.save_path, 'shapefiles_for_period_{}s'.format(period))
if not os.path.exists(directory):
os.mkdir(directory)
outpath = os.path.join(directory, filename)
df.to_file(outpath, driver='ESRI Shapefile')
print("Saved shapefiles to %s", outpath)
def plot(self):
"""
plot rms in map view
"""
if self.tick_locator is None:
x_locator = np.round(
(self.residual.residual_array['lon'].max() -
self.residual.residual_array['lon'].min()) / 5, 2)
y_locator = np.round(
(self.residual.residual_array['lat'].max() -
self.residual.residual_array['lat'].min()) / 5, 2)
if x_locator > y_locator:
self.tick_locator = x_locator
elif x_locator < y_locator:
self.tick_locator = y_locator
if self.pad_x is None:
self.pad_x = self.tick_locator / 2
if self.pad_y is None:
self.pad_y = self.tick_locator / 2
# Get number of rows based on what is being plotted.
sp_rows, sp_cols = len(self.plot_z_list) / 2, 2
# Adjust dimensions based on number of rows.
# Hardcoded - having issues getting the right spacing between
# labels and subplots.
if sp_rows == 1:
self.fig_size[1] = 3.
elif sp_rows == 2:
self.fig_size[1] = 5.6
plt.rcParams['font.size'] = self.font_size
plt.rcParams['figure.subplot.left'] = self.subplot_left
plt.rcParams['figure.subplot.right'] = self.subplot_right
plt.rcParams['figure.subplot.bottom'] = self.subplot_bottom
plt.rcParams['figure.subplot.top'] = self.subplot_top
plt.rcParams['figure.subplot.wspace'] = self.subplot_hspace
plt.rcParams['figure.subplot.hspace'] = self.subplot_vspace
self.fig = plt.figure(self.fig_num, self.fig_size, dpi=self.fig_dpi)
lon = self.residual.residual_array['lon']
lat = self.residual.residual_array['lat']
for p_dict in self.plot_z_list:
rms, filt = self._calculate_rms(p_dict)
ax = self.fig.add_subplot(sp_rows,
sp_cols,
p_dict['plot_num'],
aspect='equal')
plt.scatter(
lon[filt],
lat[filt],
c=rms[filt],
marker=self.marker,
edgecolors=(0, 0, 0),
cmap=self.rms_cmap,
norm=colors.Normalize(vmin=self.rms_min, vmax=self.rms_max),
)
if not np.all(filt):
filt2 = (1 - filt).astype(bool)
plt.plot(lon[filt2],
lat[filt2],
'.',
ms=0.1,
mec=(0, 0, 0),
mfc=(1, 1, 1))
# Hide y-ticks on subplots in column 2.
if p_dict['plot_num'] in (2, 4, 6):
plt.setp(ax.get_yticklabels(), visible=False)
else:
ax.set_ylabel('Latitude (deg)', fontdict=self.font_dict)
# Only show x-ticks in final row.
if p_dict['plot_num'] in (sp_rows * 2 - 1, sp_rows * 2):
ax.set_xlabel('Longitude (deg)', fontdict=self.font_dict)
else:
plt.setp(ax.get_xticklabels(), visible=False)
ax.text(
self.residual.residual_array['lon'].min() + .005 - self.pad_x,
self.residual.residual_array['lat'].max() - .005 + self.pad_y,
p_dict['label'],
verticalalignment='top',
horizontalalignment='left',
bbox={'facecolor': 'white'},
zorder=3)
ax.tick_params(direction='out')
ax.grid(zorder=0, color=(.75, .75, .75))
ax.set_xlim(self.residual.residual_array['lon'].min() - self.pad_x,
self.residual.residual_array['lon'].max() + self.pad_x)
ax.set_ylim(self.residual.residual_array['lat'].min() - self.pad_y,
self.residual.residual_array['lat'].max() + self.pad_y)
if self.bimg:
plot_geotiff_on_axes(self.bimg,
ax,
epsg_code=self.model_epsg,
band_number=self.bimg_band,
cmap=self.bimg_cmap)
ax.xaxis.set_major_locator(MultipleLocator(self.tick_locator))
ax.yaxis.set_major_locator(MultipleLocator(self.tick_locator))
ax.xaxis.set_major_formatter(FormatStrFormatter('%2.2f'))
ax.yaxis.set_major_formatter(FormatStrFormatter('%2.2f'))
cb_ax = self.fig.add_axes([self.subplot_right + .02, .225, .02, .45])
color_bar = mcb.ColorbarBase(cb_ax,
cmap=self.rms_cmap,
norm=colors.Normalize(vmin=self.rms_min,
vmax=self.rms_max),
orientation='vertical')
color_bar.set_label('RMS', fontdict=self.font_dict)
self._fig_title(font_size=self.font_size + 3, font_weight='bold')
self.fig.show()
# BM: Is this still in use? `Residual` has no attribute `data_array`
# which breaks this function.
def plot_map(self):
"""
plot the misfit as a map instead of points
"""
rms_1 = 1. / self.rms_max
if self.tick_locator is None:
x_locator = np.round((self.residual.data_array['lon'].max() -
self.residual.data_array['lon'].min()) / 5,
2)
y_locator = np.round((self.residual.data_array['lat'].max() -
self.residual.data_array['lat'].min()) / 5,
2)
if x_locator > y_locator:
self.tick_locator = x_locator
elif x_locator < y_locator:
self.tick_locator = y_locator
if self.pad_x is None:
self.pad_x = self.tick_locator / 2
if self.pad_y is None:
self.pad_y = self.tick_locator / 2
plt.rcParams['font.size'] = self.font_size
plt.rcParams['figure.subplot.left'] = self.subplot_left
plt.rcParams['figure.subplot.right'] = self.subplot_right
plt.rcParams['figure.subplot.bottom'] = self.subplot_bottom
plt.rcParams['figure.subplot.top'] = self.subplot_top
plt.rcParams['figure.subplot.wspace'] = self.subplot_hspace
plt.rcParams['figure.subplot.hspace'] = self.subplot_vspace
self.fig = plt.figure(self.fig_num, self.fig_size, dpi=self.fig_dpi)
lat_arr = self.residual.data_array['lat']
lon_arr = self.residual.data_array['lon']
data_points = np.array([lon_arr, lat_arr])
interp_lat = np.linspace(lat_arr.min(), lat_arr.max(),
3 * self.residual.data_array.size)
interp_lon = np.linspace(lon_arr.min(), lon_arr.max(),
3 * self.residual.data_array.size)
grid_x, grid_y = np.meshgrid(interp_lon, interp_lat)
# calculate rms
z_err = self.residual.data_array['z_err'].copy()
z_err[np.where(z_err == 0.0)] = 1.0
z_rms = np.abs(self.residual.data_array['z']) / z_err.real
t_err = self.residual.data_array['tip_err'].copy()
t_err[np.where(t_err == 0.0)] = 1.0
t_rms = np.abs(self.residual.data_array['tip']) / t_err.real
# --> plot maps
for p_dict in self.plot_z_list:
ax = self.fig.add_subplot(3, 2, p_dict['plot_num'], aspect='equal')
if p_dict['plot_num'] == 1 or p_dict['plot_num'] == 3:
ax.set_ylabel('Latitude (deg)', fontdict=self.font_dict)
plt.setp(ax.get_xticklabels(), visible=False)
elif p_dict['plot_num'] == 2 or p_dict['plot_num'] == 4:
plt.setp(ax.get_xticklabels(), visible=False)
plt.setp(ax.get_yticklabels(), visible=False)
elif p_dict['plot_num'] == 6:
plt.setp(ax.get_yticklabels(), visible=False)
ax.set_xlabel('Longitude (deg)', fontdict=self.font_dict)
else:
ax.set_xlabel('Longitude (deg)', fontdict=self.font_dict)
ax.set_ylabel('Latitude (deg)', fontdict=self.font_dict)
ax.text(self.residual.data_array['lon'].min() + .005 - self.pad_x,
self.residual.data_array['lat'].max() - .005 + self.pad_y,
p_dict['label'],
verticalalignment='top',
horizontalalignment='left',
bbox={'facecolor': 'white'},
zorder=3)
ax.tick_params(direction='out')
ax.grid(zorder=0, color=(.75, .75, .75), lw=.75)
# [line.set_zorder(3) for line in ax.lines]
ax.set_xlim(self.residual.data_array['lon'].min() - self.pad_x,
self.residual.data_array['lon'].max() + self.pad_x)
ax.set_ylim(self.residual.data_array['lat'].min() - self.pad_y,
self.residual.data_array['lat'].max() + self.pad_y)
ax.xaxis.set_major_locator(MultipleLocator(self.tick_locator))
ax.yaxis.set_major_locator(MultipleLocator(self.tick_locator))
ax.xaxis.set_major_formatter(FormatStrFormatter('%2.2f'))
ax.yaxis.set_major_formatter(FormatStrFormatter('%2.2f'))
# -----------------------------
ii = p_dict['index'][0]
jj = p_dict['index'][1]
# calulate the rms self.residual/error
if p_dict['plot_num'] < 5:
rms = z_rms[:, self.period_index, ii, jj]
else:
rms = t_rms[:, self.period_index, ii, jj]
# check for non zeros
nz = np.nonzero(rms)
data_points = np.array([lon_arr[nz], lat_arr[nz]])
rms = rms[nz]
if len(rms) < 5:
continue
# interpolate onto a grid
rms_map = interpolate.griddata(data_points.T,
rms, (grid_x, grid_y),
method='cubic')
# plot the grid
im = ax.pcolormesh(grid_x,
grid_y,
rms_map,
cmap=self.rms_map_cmap,
vmin=self.rms_min,
vmax=self.rms_max,
zorder=3)
ax.grid(zorder=0, color=(.75, .75, .75), lw=.75)
# cb_ax = mcb.make_axes(ax, orientation='vertical', fraction=.1)
cb_ax = self.fig.add_axes([self.subplot_right + .02, .225, .02, .45])
color_bar = mcb.ColorbarBase(cb_ax,
cmap=self.rms_map_cmap,
norm=colors.Normalize(vmin=self.rms_min,
vmax=self.rms_max),
orientation='vertical')
color_bar.set_label('RMS', fontdict=self.font_dict)
self._fig_title(font_size=self.font_size + 3, font_weight='bold')
self.fig.show()
def basemap_plot(self,
datatype='all',
tick_interval=None,
save=False,
savepath=None,
new_figure=True,
mesh_rotation_angle=0.,
show_topography=False,
**basemap_kwargs):
"""
plot RMS misfit on a basemap using basemap modules in matplotlib
:param datatype: type of data to plot misfit for, either 'z', 'tip', or
'all' to plot overall RMS
:param tick_interval: tick interval on map in degrees, if None it is
calculated from the data extent
:param save: True/False, whether or not to save and close figure
:param savepath: full path of file to save to, if None, saves to
self.save_path
:new_figure: True/False, whether or not to initiate a new figure for
the plot
:param mesh_rotation_angle: rotation angle of mesh, in degrees
clockwise from north
:param show_topography: True/False, option to show the topograpy in the
background
:param **basemap_kwargs: provide any valid arguments to Basemap
instance (e.g. projection etc - see
https://basemaptutorial.readthedocs.io/en/latest/basemap.html)
and these will be passed to the map.
"""
if self.model_epsg is None:
print(
"No projection information provided, please provide the model epsg code relevant to your model"
)
return
if new_figure:
self.fig = plt.figure()
# rotate stations
if mesh_rotation_angle != 0:
if hasattr(self, 'mesh_rotation_angle'):
angle_to_rotate = self.mesh_rotation_angle - mesh_rotation_angle
else:
angle_to_rotate = -mesh_rotation_angle
self.mesh_rotation_angle = mesh_rotation_angle
self.residual.station_locations.rotate_stations(angle_to_rotate)
# get relative locations
seast, snorth = self.residual.station_locations.rel_east + self.residual.station_locations.center_point['east'],\
self.residual.station_locations.rel_north + self.residual.station_locations.center_point['north']
# project station location eastings and northings to lat/long
slon, slat = epsg_project(seast, snorth, self.model_epsg, 4326)
self.residual.station_locations.station_locations['lon'] = slon
self.residual.station_locations.station_locations['lat'] = slat
# initialise a basemap with extents, projection etc calculated from data
# if not provided in basemap_kwargs # BM: todo?
self.bm = basemap_tools.initialise_basemap(
self.residual.station_locations, **basemap_kwargs)
basemap_tools.add_basemap_frame(self.bm, tick_interval=tick_interval)
# project to basemap coordinates
sx, sy = self.bm(slon, slat)
# make scatter plot
if datatype == 'all':
if self.period_index == 'all':
rms = self.residual.rms_array['rms']
else:
rms = self.residual.rms_array['rms_period'][:,
self.period_index]
elif datatype in ['z', 'tip']:
if self.period_index == 'all':
rms = self.residual.rms_array['rms_{}'.format(datatype)]
else:
rms = self.residual.rms_array['rms_{}_period'.format(
datatype)][:, self.period_index]
filt = np.nan_to_num(rms).astype(bool)
self.bm.scatter(sx[filt],
sy[filt],
c=rms[filt],
marker=self.marker,
edgecolors=(0, 0, 0),
cmap=self.rms_cmap,
norm=colors.Normalize(vmin=self.rms_min,
vmax=self.rms_max))
if not np.all(filt):
filt2 = (1 - filt).astype(bool)
self.bm.plot(sx[filt2], sy[filt2], 'k.')
color_bar = plt.colorbar(cmap=self.rms_cmap,
shrink=0.6,
norm=colors.Normalize(vmin=self.rms_min,
vmax=self.rms_max),
orientation='vertical')
color_bar.set_label('RMS')
title_dict = {'all': 'Z + Tipper', 'z': 'Z', 'tip': 'Tipper'}
if self.period_index == 'all':
plt.title('RMS misfit over all periods for ' +
title_dict[datatype])
else:
plt.title('RMS misfit for period = {0:.5g} (s)'.format(
self.residual.period_list[self.period_index]))
def redraw_plot(self):
plt.close(self.fig)
self.plot()
def save_figure(self,
save_path=None,
save_fn_basename=None,
save_fig_dpi=None,
fig_format='png',
fig_close=True):
"""
save figure in the desired format
"""
if save_path is not None:
self.save_path = save_path
if save_fn_basename is not None:
pass
else:
if self.period_index == 'all':
save_fn_basename = 'RMS_AllPeriods.{}'.format(fig_format)
else:
save_fn_basename = '{0:02}_RMS_{1:.5g}_s.{2}'.format(
self.period_index,
self.residual.period_list[self.period_index], fig_format)
save_fn = os.path.join(self.save_path, save_fn_basename)
if save_fig_dpi is not None:
self.fig_dpi = save_fig_dpi
self.fig.savefig(save_fn, dpi=self.fig_dpi)
print('saved file to {0}'.format(save_fn))
if fig_close:
plt.close(self.fig)
def plot_loop(self, fig_format='png', style='point'):
"""
loop over all periods and save figures accordingly
:param: style [ 'point' | 'map' ]
"""
for f_index in range(self.residual.period_list.size):
self.period_index = f_index
if style == 'point':
self.plot()
self.save_figure(fig_format=fig_format)
elif style == 'map':
self.plot_map()
self.save_figure(fig_format=fig_format)
class PlotRMSMaps(object):
"""
plots the RMS as (data-model)/(error) in map view for all components
of the data file. Gets this infomration from the .res file output
by ModEM.
Arguments:
------------------
**residual_fn** : string
full path to .res file
=================== =======================================================
Attributes Description
=================== =======================================================
fig matplotlib.figure instance for a single plot
fig_dpi dots-per-inch resolution of figure *default* is 200
fig_num number of fig instance *default* is 1
fig_size size of figure in inches [width, height]
*default* is [7,6]
font_size font size of tick labels, axis labels are +2
*default* is 8
marker marker style for station rms,
see matplotlib.line for options,
*default* is 's' --> square
marker_size size of marker in points. *default* is 10
pad_x padding in map units from edge of the axis to stations
at the extremeties in longitude.
*default* is 1/2 tick_locator
pad_y padding in map units from edge of the axis to stations
at the extremeties in latitude.
*default* is 1/2 tick_locator
period_index index of the period you want to plot according to
self.residual.period_list. *default* is 1
plot_yn [ 'y' | 'n' ] default is 'y' to plot on instantiation
plot_z_list internal variable for plotting
residual modem.Data instance that holds all the information
from the residual_fn given
residual_fn full path to .res file
rms_cmap matplotlib.cm object for coloring the markers
rms_cmap_dict dictionary of color values for rms_cmap
rms_max maximum rms to plot. *default* is 5.0
rms_min minimum rms to plot. *default* is 1.0
save_path path to save figures to. *default* is directory of
residual_fn
subplot_bottom spacing from axis to bottom of figure canvas.
*default* is .1
subplot_hspace horizontal spacing between subplots.
*default* is .1
subplot_left spacing from axis to left of figure canvas.
*default* is .1
subplot_right spacing from axis to right of figure canvas.
*default* is .9
subplot_top spacing from axis to top of figure canvas.
*default* is .95
subplot_vspace vertical spacing between subplots.
*default* is .01
tick_locator increment for x and y major ticks. *default* is
limits/5
=================== =======================================================
=================== =======================================================
Methods Description
=================== =======================================================
plot plot rms maps for a single period
plot_loop loop over all frequencies and save figures to save_path
read_residual_fn read in residual_fn
redraw_plot after updating attributes call redraw_plot to
well redraw the plot
save_figure save the figure to a file
=================== =======================================================
:Example: ::
>>> import mtpy.modeling.modem as modem
>>> rms_plot = PlotRMSMaps(r"/home/ModEM/Inv1/mb_NLCG_030.res")
>>> # change some attributes
>>> rms_plot.fig_size = [6, 4]
>>> rms_plot.rms_max = 3
>>> rms_plot.redraw_plot()
>>> # happy with the look now loop over all periods
>>> rms_plot.plot_loop()
"""
def __init__(self, residual_fn, **kwargs):
self.residual_fn = residual_fn
self.residual = None
self.save_path = kwargs.pop('save_path',
os.path.dirname(self.residual_fn))
self.period_index = kwargs.pop('period_index', 0)
self.subplot_left = kwargs.pop('subplot_left', .1)
self.subplot_right = kwargs.pop('subplot_right', .9)
self.subplot_top = kwargs.pop('subplot_top', .95)
self.subplot_bottom = kwargs.pop('subplot_bottom', .1)
self.subplot_hspace = kwargs.pop('subplot_hspace', .1)
self.subplot_vspace = kwargs.pop('subplot_vspace', .01)
self.font_size = kwargs.pop('font_size', 8)
self.fig_size = kwargs.pop('fig_size', [7.75, 6.75])
self.fig_dpi = kwargs.pop('fig_dpi', 200)
self.fig_num = kwargs.pop('fig_num', 1)
self.fig = None
self.marker = kwargs.pop('marker', 's')
self.marker_size = kwargs.pop('marker_size', 10)
self.rms_max = kwargs.pop('rms_max', 5)
self.rms_min = kwargs.pop('rms_min', 0)
self.tick_locator = kwargs.pop('tick_locator', None)
self.pad_x = kwargs.pop('pad_x', None)
self.pad_y = kwargs.pop('pad_y', None)
self.plot_yn = kwargs.pop('plot_yn', 'y')
# colormap for rms, goes white to black from 0 to rms max and
# red below 1 to show where the data is being over fit
self.rms_cmap_dict = {
'red': ((0.0, 1.0, 1.0), (0.2, 1.0, 1.0), (1.0, 0.0, 0.0)),
'green': ((0.0, 0.0, 0.0), (0.2, 1.0, 1.0), (1.0, 0.0, 0.0)),
'blue': ((0.0, 0.0, 0.0), (0.2, 1.0, 1.0), (1.0, 0.0, 0.0))
}
self.rms_cmap = colors.LinearSegmentedColormap('rms_cmap',
self.rms_cmap_dict, 256)
self.plot_z_list = [{
'label': r'$Z_{xx}$',
'index': (0, 0),
'plot_num': 1
}, {
'label': r'$Z_{xy}$',
'index': (0, 1),
'plot_num': 2
}, {
'label': r'$Z_{yx}$',
'index': (1, 0),
'plot_num': 3
}, {
'label': r'$Z_{yy}$',
'index': (1, 1),
'plot_num': 4
}, {
'label': r'$T_{x}$',
'index': (0, 0),
'plot_num': 5
}, {
'label': r'$T_{y}$',
'index': (0, 1),
'plot_num': 6
}]
if self.plot_yn == 'y':
self.plot()
def read_residual_fn(self):
if self.residual is None:
self.residual = Residual(residual_fn=self.residual_fn)
# self.residual.read_data_file(self.residual_fn)
self.residual.read_residual_file()
self.residual.get_rms()
else:
pass
def plot(self):
"""
plot rms in map view
"""
self.read_residual_fn()
font_dict = {'size': self.font_size + 2, 'weight': 'bold'}
rms_1 = 1. / self.rms_max
if self.tick_locator is None:
x_locator = np.round(
(self.residual.residual_array['lon'].max() -
self.residual.residual_array['lon'].min()) / 5, 2)
y_locator = np.round(
(self.residual.residual_array['lat'].max() -
self.residual.residual_array['lat'].min()) / 5, 2)
if x_locator > y_locator:
self.tick_locator = x_locator
elif x_locator < y_locator:
self.tick_locator = y_locator
if self.pad_x is None:
self.pad_x = self.tick_locator / 2
if self.pad_y is None:
self.pad_y = self.tick_locator / 2
plt.rcParams['font.size'] = self.font_size
plt.rcParams['figure.subplot.left'] = self.subplot_left
plt.rcParams['figure.subplot.right'] = self.subplot_right
plt.rcParams['figure.subplot.bottom'] = self.subplot_bottom
plt.rcParams['figure.subplot.top'] = self.subplot_top
plt.rcParams['figure.subplot.wspace'] = self.subplot_hspace
plt.rcParams['figure.subplot.hspace'] = self.subplot_vspace
self.fig = plt.figure(self.fig_num, self.fig_size, dpi=self.fig_dpi)
for p_dict in self.plot_z_list:
ax = self.fig.add_subplot(3, 2, p_dict['plot_num'], aspect='equal')
ii = p_dict['index'][0]
jj = p_dict['index'][0]
# for r_arr in self.residual.residual_array:
for ridx in range(len(self.residual.residual_array)):
if self.period_index == 'all':
r_arr = self.residual.rms_array[ridx]
if p_dict['plot_num'] < 5:
rms = r_arr['rms_z']
else:
rms = r_arr['rms_tip']
else:
r_arr = self.residual.residual_array[ridx]
# calulate the rms self.residual/error
if p_dict['plot_num'] < 5:
rms = r_arr['z'][self.period_index, ii, jj].__abs__() / \
r_arr['z_err'][self.period_index, ii, jj].real
else:
rms = r_arr['tip'][self.period_index, ii, jj].__abs__() / \
r_arr['tip_err'][self.period_index, ii, jj].real
# color appropriately
if np.nan_to_num(rms) == 0.0:
marker_color = (1, 1, 1)
marker = '.'
marker_size = .1
marker_edge_color = (1, 1, 1)
if rms > self.rms_max:
marker_color = (0, 0, 0)
marker = self.marker
marker_size = self.marker_size
marker_edge_color = (0, 0, 0)
elif 1 <= rms <= self.rms_max:
r_color = 1 - rms / self.rms_max + rms_1
marker_color = (r_color, r_color, r_color)
marker = self.marker
marker_size = self.marker_size
marker_edge_color = (0, 0, 0)
elif rms < 1:
r_color = 1 - rms / self.rms_max
marker_color = (1, r_color, r_color)
marker = self.marker
marker_size = self.marker_size
marker_edge_color = (0, 0, 0)
ax.plot(r_arr['lon'],
r_arr['lat'],
marker=marker,
ms=marker_size,
mec=marker_edge_color,
mfc=marker_color,
zorder=3)
if p_dict['plot_num'] == 1 or p_dict['plot_num'] == 3:
ax.set_ylabel('Latitude (deg)', fontdict=font_dict)
plt.setp(ax.get_xticklabels(), visible=False)
elif p_dict['plot_num'] == 2 or p_dict['plot_num'] == 4:
plt.setp(ax.get_xticklabels(), visible=False)
plt.setp(ax.get_yticklabels(), visible=False)
elif p_dict['plot_num'] == 6:
plt.setp(ax.get_yticklabels(), visible=False)
ax.set_xlabel('Longitude (deg)', fontdict=font_dict)
else:
ax.set_xlabel('Longitude (deg)', fontdict=font_dict)
ax.set_ylabel('Latitude (deg)', fontdict=font_dict)
ax.text(
self.residual.residual_array['lon'].min() + .005 - self.pad_x,
self.residual.residual_array['lat'].max() - .005 + self.pad_y,
p_dict['label'],
verticalalignment='top',
horizontalalignment='left',
bbox={'facecolor': 'white'},
zorder=3)
ax.tick_params(direction='out')
ax.grid(zorder=0, color=(.75, .75, .75))
# [line.set_zorder(3) for line in ax.lines]
ax.set_xlim(self.residual.residual_array['lon'].min() - self.pad_x,
self.residual.residual_array['lon'].max() + self.pad_x)
ax.set_ylim(self.residual.residual_array['lat'].min() - self.pad_y,
self.residual.residual_array['lat'].max() + self.pad_y)
ax.xaxis.set_major_locator(MultipleLocator(self.tick_locator))
ax.yaxis.set_major_locator(MultipleLocator(self.tick_locator))
ax.xaxis.set_major_formatter(FormatStrFormatter('%2.2f'))
ax.yaxis.set_major_formatter(FormatStrFormatter('%2.2f'))
# cb_ax = mcb.make_axes(ax, orientation='vertical', fraction=.1)
cb_ax = self.fig.add_axes([self.subplot_right + .02, .225, .02, .45])
color_bar = mcb.ColorbarBase(cb_ax,
cmap=self.rms_cmap,
norm=colors.Normalize(vmin=self.rms_min,
vmax=self.rms_max),
orientation='vertical')
color_bar.set_label('RMS', fontdict=font_dict)
if self.period_index == 'all':
self.fig.suptitle('all periods',
fontdict={
'size': self.font_size + 3,
'weight': 'bold'
})
else:
self.fig.suptitle('period = {0:.5g} (s)'.format(
self.residual.period_list[self.period_index]),
fontdict={
'size': self.font_size + 3,
'weight': 'bold'
})
self.fig.show()
def redraw_plot(self):
plt.close(self.fig)
self.plot()
def save_figure(self,
save_path=None,
save_fn_basename=None,
save_fig_dpi=None,
fig_format='png',
fig_close=True):
"""
save figure in the desired format
"""
if save_path is not None:
self.save_path = save_path
if save_fn_basename is not None:
pass
else:
if self.period_index == 'all':
save_fn_basename = 'RMS_AllPeriods.{}'.format(fig_format)
else:
save_fn_basename = '{0:02}_RMS_{1:.5g}_s.{2}'.format(
self.period_index,
self.residual.period_list[self.period_index], fig_format)
save_fn = os.path.join(self.save_path, save_fn_basename)
if save_fig_dpi is not None:
self.fig_dpi = save_fig_dpi
self.fig.savefig(save_fn, dpi=self.fig_dpi)
print('saved file to {0}'.format(save_fn))
if fig_close:
plt.close(self.fig)
def plot_loop(self, fig_format='png'):
"""
loop over all periods and save figures accordingly
"""
self.read_residual_fn()
for f_index in range(self.residual.period_list.size):
self.period_index = f_index
self.plot()
self.save_figure(fig_format=fig_format)
class TestResidual(TestCase):
def setUp(self):
self._model_dir = os.path.join(SAMPLE_DIR, 'ModEM_2')
self._residual_fn = os.path.join(self._model_dir,
'Modular_MPI_NLCG_004.res')
self.residual_object = Residual(residual_fn=self._residual_fn)
self.residual_object.read_residual_file()
self.test_station = 'Synth10'
self.sidx = np.where(self.residual_object.residual_array['station']\
==self.test_station)[0][0]
def test_read_residual(self):
expected_residual_z = np.array(
[[[-1.02604300 - 1.02169400e+00j, 0.57546600 - 2.86067700e+01j],
[-1.66748500 + 2.77643100e+01j, 1.10572800 + 7.91478700e-01j]],
[[-0.65690610 - 7.81721300e-01j, 3.19986900 - 1.32354200e+01j],
[-3.99973300 + 1.25588600e+01j, 0.70137690 + 7.18065500e-01j]],
[[-0.37482920 - 5.49270000e-01j, 2.99884200 - 5.47220900e+00j],
[-3.48449700 + 4.94168400e+00j, 0.38315510 + 5.34895800e-01j]],
[[-0.22538380 - 3.74392300e-01j, 2.25689600 - 1.52787900e+00j],
[-2.48044900 + 1.12663400e+00j, 0.24971600 + 3.52619400e-01j]],
[[-0.10237530 - 2.46537400e-01j, 1.22627900 + 2.40738800e-01j],
[-1.30554300 - 4.96037400e-01j, 0.17602110 + 1.96752500e-01j]],
[[-0.06368253 - 1.50662800e-01j, 0.22056860 + 3.82570600e-01j],
[-0.15430870 - 6.20512300e-01j, 0.08838979 + 1.58171100e-01j]],
[[-0.02782632 - 9.68861500e-02j, 0.01294457 + 1.44029600e-01j],
[0.04851138 - 2.18578600e-01j, 0.06537638 + 6.12342500e-02j]],
[[-0.04536762 - 9.97313200e-02j, 0.23600760 + 6.91851800e-02j],
[-0.19451440 - 9.89826000e-02j, 0.04738959 + 4.03351500e-03j]],
[[0.02097188 - 1.58254400e-02j, 0.37978140 + 2.43604500e-01j],
[-0.25993120 - 1.23627200e-01j, 0.06108656 - 4.74416500e-02j]],
[[0.00851522 + 1.43499600e-02j, 0.03704846 + 2.03981800e-01j],
[-0.05785917 - 1.39049200e-01j, 0.12167730 - 7.85872700e-02j]],
[[0.01532396 + 4.53273900e-02j, -0.18341090 + 1.94764500e-01j],
[0.17545040 - 1.09104100e-01j, 0.12086500 + 4.31819300e-02j]],
[[-0.06653160 + 4.91978100e-03j, -0.25800590 + 5.63935700e-02j],
[0.23867870 + 2.23033200e-02j, 0.14759170 + 1.04700000e-01j]],
[[-0.02225152 - 2.51810700e-02j, -0.24345510 - 8.70721200e-02j],
[0.18595070 + 2.62889600e-02j, 0.01455407 + 1.57621400e-01j]],
[[0.01056665 + 1.59123900e-02j, -0.12207970 - 1.49491900e-01j],
[0.14559130 - 8.58512800e-03j, -0.07530988 + 1.22342400e-01j]],
[[-0.02195550 + 7.05037300e-02j, -0.02480397 - 1.14487400e-01j],
[0.16408400 - 3.97682300e-02j, -0.12009660 + 7.95397500e-02j]],
[[-0.10702040 + 6.75635400e-02j, 0.04605616 - 6.53660100e-02j],
[0.23191780 - 2.30734300e-02j, -0.13914140 + 4.37319200e-02j]],
[[-0.11429350 - 5.96242700e-03j, 0.04939716 + 6.49396100e-03j],
[0.23719750 + 2.03324600e-02j, -0.16310670 - 1.33806800e-02j]]])
expected_residual_tip = np.array(
[[[
1.99677300e-02 + 7.51403000e-03j,
-9.26884200e-03 + 7.61811900e-04j
]],
[[
1.56102400e-02 + 9.40827100e-03j,
-9.94980800e-03 + 2.77858500e-05j
]],
[[
1.00342300e-02 + 9.31690900e-03j,
-9.23218900e-03 - 1.33653600e-04j
]],
[[
5.68685000e-03 + 8.56526900e-03j,
-8.54973100e-03 + 2.46999200e-04j
]],
[[
1.07812200e-03 + 8.77348500e-03j,
-8.40960800e-03 + 8.43687200e-04j
]],
[[
1.18444500e-04 + 5.94769200e-03j,
-1.05262400e-02 + 1.20061900e-04j
]],
[[
-6.58875300e-03 + 6.67077300e-03j,
-1.49532000e-02 + 7.55132400e-03j
]],
[[
-1.38596400e-02 + 9.23400700e-03j,
-1.75996500e-02 + 7.20104400e-03j
]],
[[
-2.93723000e-02 - 1.98601600e-02j,
-1.66622000e-02 + 1.51911600e-02j
]],
[[
-3.63411900e-02 - 2.81472900e-02j,
-4.21293500e-02 + 1.69332600e-03j
]],
[[
4.33842300e-03 - 9.09171200e-02j,
-5.64092100e-02 - 6.71133000e-02j
]],
[[
2.31374400e-02 - 1.23249000e-01j,
-4.60595000e-02 - 1.08313400e-01j
]],
[[
1.46526100e-01 - 1.77551800e-01j,
2.11499700e-02 - 1.97421400e-01j
]],
[[
2.86257700e-01 - 1.26995500e-01j,
1.63245800e-01 - 2.62023200e-01j
]],
[[
3.43578700e-01 + 2.36713800e-02j,
3.56271700e-01 - 2.17845400e-01j
]],
[[
2.36714300e-01 + 1.50994700e-01j,
4.83549200e-01 - 9.88437900e-02j
]],
[[
9.51891900e-02 + 1.36287700e-01j,
4.89243800e-01 + 8.02669000e-02j
]]])
expected_perlist = np.array([
1.00000000e-02, 2.05353000e-02, 4.21697000e-02, 8.65964000e-02,
1.77828000e-01, 3.65174000e-01, 7.49894000e-01, 1.53993000e+00,
3.16228000e+00, 6.49382000e+00, 1.33352000e+01, 2.73842000e+01,
5.62341000e+01, 1.15478000e+02, 2.37137000e+02, 4.86968000e+02,
1.00000000e+03
])
assert(np.all(np.abs(self.residual_object.residual_array['z'][self.sidx]-\
expected_residual_z)/\
expected_residual_z < 1e-6))
assert(np.all(np.abs(self.residual_object.residual_array['tip'][self.sidx]-\
expected_residual_tip)/\
expected_residual_tip < 1e-6))
assert(np.all(np.abs(self.residual_object.period_list-\
expected_perlist)/\
expected_perlist < 1e-6))
def test_get_rms(self):
self.residual_object.get_rms()
expected_rms = 4.598318
expected_rms_z = 5.069801
expected_rms_tip = 3.3062455
assert (np.abs(self.residual_object.rms - expected_rms < 1e-6))
assert (np.abs(self.residual_object.rms_z - expected_rms_z < 1e-6))
assert (np.abs(self.residual_object.rms_tip - expected_rms_tip < 1e-6))
# expected rms by component for station
expected_rms_by_component_z = np.array([[1.54969747, 3.45869927],
[4.34009684, 2.31467718]])
expected_rms_by_component_tip = np.array([[3.63839712, 5.18765567]])
assert(np.all(np.abs(self.residual_object.rms_array['rms_z_component'][self.sidx] - \
expected_rms_by_component_z) < 1e-6))
assert(np.all(np.abs(self.residual_object.rms_array['rms_tip_component'][self.sidx] - \
expected_rms_by_component_tip) < 1e-6))
expected_rms_by_period = np.array([
5.0808857, 3.47096626, 2.34709635, 1.52675356, 1.09765601,
0.73261742, 0.43272026, 0.62780779, 1.13149442, 0.95879571,
1.71206363, 2.41720885, 3.54772784, 4.66569959, 5.69325904,
6.60449661, 7.3224976
])
expected_rms_by_period_z = np.array([
6.21674098, 4.24399835, 2.86799775, 1.86322907, 1.33659998,
0.88588157, 0.47925494, 0.70885089, 1.29429634, 0.91572845,
1.47599353, 2.15781454, 2.45842532, 2.40733405, 2.81537801,
4.54401732, 6.51544423
])
expected_rms_by_period_tip = np.array([
0.38789413, 0.3460871, 0.27524824, 0.22289946, 0.20383115,
0.20152558, 0.31995293, 0.42129405, 0.7003091, 1.03959147,
2.10626965, 2.86642089, 5.066696, 7.3291025, 9.02146822,
9.46371701, 8.71521005
])
assert(np.all(np.abs(self.residual_object.rms_array['rms_z_period'][self.sidx] - \
expected_rms_by_period_z) < 1e-6))
assert(np.all(np.abs(self.residual_object.rms_array['rms_tip_period'][self.sidx] - \
expected_rms_by_period_tip) < 1e-6))
assert(np.all(np.abs(self.residual_object.rms_array['rms_period'][self.sidx] - \
expected_rms_by_period) < 1e-6))
os.chdir(r'C:/mtpywin/mtpy')
#from mtpy.imaging.plot_response import PlotResponse
from mtpy.modeling.modem import Residual
import matplotlib.pyplot as plt
#### Inputs ####
wd = r'C:\mtpywin\mtpy\examples\model_files\ModEM'
savepath = r'C:\tmp'
filestem = 'Modular_MPI_NLCG_004'
datafn = op.join(wd, 'ModEM_Data.dat')
respfn = op.join(wd, filestem + '.dat')
# read residual file into a residual object
residObj = Residual(residual_fn=op.join(wd, filestem + '.res'))
residObj.read_residual_file()
residObj.get_rms()
# get some parameters as attributes
lat, lon, east, north, rel_east, rel_north, rms, station = [
residObj.rms_array[key] for key in
['lat', 'lon', 'east', 'north', 'rel_east', 'rel_north', 'rms', 'station']
]
# create the figure
plt.figure()
plt.scatter(east, north, c=rms, cmap='bwr')
for i in range(len(station)):
plt.text(east[i], north[i], station[i], fontsize=8)
plt.colorbar()
"""
import numpy as np
import matplotlib.pyplot as plt
from matplotlib import colors as colors
from matplotlib import colorbar as mcb
from matplotlib import image
from matplotlib import gridspec
from mtpy.modeling.modem import Residual
rfn = r"c:\Users\jpeacock\OneDrive - DOI\Geothermal\GreatBasin\modem_inv\gb_01\gb_z03_t02_c02_046.res"
im_fn = r"c:\Users\jpeacock\OneDrive - DOI\MountainPass\Figures\mp_st_basemap.png"
r = Residual(residual_fn=rfn)
r.read_residual_file()
r.get_rms()
dx = 0.00180
dy = 0.00180
label_dict = {"size": 14, "weight": "bold"}
line_dict = {
0: {"label": "$Z_{xx}$", "color": (0.25, 0.5, 0.75)},
1: {"label": "$Z_{xy}$", "color": (0.25, 0.25, 0.75)},
2: {"label": "$Z_{yx}$", "color": (0.75, 0.25, 0.25)},
3: {"label": "$Z_{yy}$", "color": (0.75, 0.5, 0.25)},
}
rms_cmap_dict = {
"red": ((0.0, 1.0, 1.0), (0.2, 1.0, 1.0), (1.0, 0.0, 0.0)),
"green": ((0.0, 0.0, 0.0), (0.2, 1.0, 1.0), (1.0, 0.0, 0.0)),
"blue": ((0.0, 0.0, 0.0), (0.2, 1.0, 1.0), (1.0, 0.0, 0.0)),