Python build_ete_tree Examples

Example #1

File: test.py Project: cjlee112/logtree

def count_neighbors(root):
    tree = mut.build_ete_tree(root)
    return count_tree_neighbors(tree)

Example #2

File: test.py Project: cjlee112/logtree

def calc_neighb_dist(n, **kwargs):
    root, nseq = mut.run_test(n, **kwargs)
    tree = mut.build_ete_tree(root)
    return count_tree_neighbors(tree).values()