Python format_participant_table Examples

Example #1

File: test_format.py Project: gregcaporaso/my-microbes

    def test_format_participant_table(self):
        """Test formatting an HTML table of study participants."""
        # Test URL prefix without trailing slash.
        exp = ('<table class="data-table">\n'
               '<tr><th>Personal ID</th></tr>\n'
               '<tr><td><a href="http://my-microbes.qiime.org/'
                 'foo1/index.html">foo1</a></td></tr>\n'
               '<tr><td><a href="http://my-microbes.qiime.org/'
                 'foo2/index.html">foo2</a></td></tr>\n'
               '</table>\n')
        obs = format_participant_table(self.recipients,
                                       'http://my-microbes.qiime.org')
        self.assertEqual(obs, exp)

        # Test URL prefix with trailing slash.
        obs = format_participant_table(self.recipients,
                                       'http://my-microbes.qiime.org/')
        self.assertEqual(obs, exp)

        # Test empty recipients file.
        exp = ('<table class="data-table">\n'
               '<tr><th>Personal ID</th></tr>\n'
               '</table>\n')
        obs = format_participant_table(self.empty_recipients,
                                       'http://my-microbes.qiime.org')
        self.assertEqual(obs, exp)

Example #2

File: generate_participant_table.py Project: gregcaporaso/my-microbes

def main():
    option_parser, opts, args = parse_command_line_parameters(**script_info)

    participant_table = format_participant_table(open(opts.participants, 'U'),
                                                  opts.url_prefix)

    with open(opts.output_fp, 'w') as output_f:
        output_f.write(participant_table)