Python ComplexSchema Examples

Example #1

File: schemas.py Project: nanome-ai/plugin-cookbook

class AddBonds:
    params = [schemas.ComplexSchema(many=True)]
    output = None

Example #2

File: schemas.py Project: nanome-ai/plugin-cookbook

class AddToWorkspace:
    params = [schemas.ComplexSchema(many=True)]
    output = None

Example #3

File: schemas.py Project: nanome-ai/plugin-cookbook

class UpdateStructuresDeep:
    params = [schemas.ComplexSchema(many=True)]
    output = None

Example #4

File: schemas.py Project: nanome-ai/plugin-cookbook

class RequestComplexList:
    params = []
    output = schemas.ComplexSchema(many=True)

Example #5

File: schemas.py Project: nanome-ai/plugin-cookbook

class RequestComplexes:
    params = [fields.List(fields.Integer)]
    output = schemas.ComplexSchema(many=True)

Example #6

File: schemas.py Project: nanome-ai/plugin-cookbook

import logging
from nanome.api import structure, schemas
from nanome.util import enums
from marshmallow import fields


logging = logging.getLogger(__name__)


structure_schema_map = {
    structure.Atom: schemas.AtomSchema(),
    structure.Bond: schemas.BondSchema(),
    structure.Residue: schemas.ResidueSchema(),
    structure.Chain: schemas.ChainSchema(),
    structure.Molecule: schemas.MoleculeSchema(),
    structure.Complex: schemas.ComplexSchema(),
}


class RequestWorkspace:
    params = []
    output = schemas.WorkspaceSchema()


class RequestComplexes:
    params = [fields.List(fields.Integer)]
    output = schemas.ComplexSchema(many=True)


class RequestComplexList:
    params = []