def test_code_summary(self):
name, result = parse_tag(self.code_summary_tag)
self.assertCountEqual(result, [
{
'CodeClass': 'Positive',
'Name': 'POS_A(128)',
'Accession': 'nmiR00813.1',
'Count': '8667',
},
{
'CodeClass': 'Negative',
'Name': 'NEG_C(0)',
'Accession': 'nmiR00828.1',
'Count': '11',
},
{
'CodeClass': 'Housekeeping',
'Name': 'RPLP0|0',
'Accession': 'NM_001002.3',
'Count': '137',
},
{
'CodeClass': 'Endogenous1',
'Name': 'hsa-miR-758|0',
'Accession': 'nmiR00633.1',
'Count': '12',
},
])
self.assertEqual(name, 'Code_Summary'.casefold())
def test_header(self):
name, result = parse_tag(self.header_tag)
self.assertDictEqual(result, {
'FileVersion': '1.6',
'SoftwareVersion': '2.1.1.0005'
})
self.assertEqual(name, 'Header'.casefold())
def test_sample_attributes(self):
name, result = parse_tag(self.sample_attributes_tag)
self.assertDictEqual(
result, {
'SampleID': '01',
'Owner': 'mk',
'Comments': '50ng',
'Date': '20100714',
'GeneRLF': 'NS_H_miR',
'SystemAPF': 'n6_vDV1',
})
self.assertEqual(name, 'Sample_Attributes'.casefold())
def test_lane_attributes(self):
name, result = parse_tag(self.lane_attributes_tag)
self.assertDictEqual(
result, {
'LaneID': '1',
'FovCount': '600',
'FovCounted': '600',
'ScannerID': 'DA01',
'StagePosition': '1',
'BindingDensity': '0.22',
'CartridgeID': 'miRNAlinearity',
})
self.assertEqual(name, 'Lane_Attributes'.casefold())
def test_messages(self):
name, result = parse_tag(self.messages_tag)
self.assertEqual(name, 'Messages'.casefold())
self.assertEqual(result, '')