def test_check_accessory_dir(tmpdir):
'''Test the utility function check_accessory_dir (create log/ and database/).'''
tmpdir = tmpdir.strpath
NCBImetaUtilities.check_accessory_dir(tmpdir)
assert os.path.exists(os.path.join(tmpdir, "log")) and os.path.exists(
os.path.join(tmpdir, "database"))
raise NCBImetaErrors.ErrorOutputDirNotExists(CONFIG_OUTPUT_DIR)
# Flat mode checking
if flat_mode:
print(
"Flat mode was requested, organizational directories will not be used.",
flush=True)
DB_DIR = os.path.join(CONFIG_OUTPUT_DIR, "")
LOG_PATH = CONFIG_OUTPUT_DIR
# Or Create accessory directory (ex. log, data, database, etc.)
elif not flat_mode:
print(
"Flat mode was not requested, organization directories will be used.",
flush=True)
NCBImetaUtilities.check_accessory_dir(CONFIG_OUTPUT_DIR)
DB_DIR = os.path.join(CONFIG_OUTPUT_DIR, "", "database", "")
LOG_PATH = os.path.join(CONFIG_OUTPUT_DIR, "", "log")
# Database path (depending on flat mode or not)
DB_PATH = os.path.join(DB_DIR, "", CONFIG_DATABASE)
#------------------------------------------------------------------------------#
# Database connection #
#------------------------------------------------------------------------------#
if not os.path.exists(DB_PATH):
print("\n" + "Creating database: " + DB_PATH, flush=True)
conn = sqlite3.connect(DB_PATH)
conn.commit()
print("\n" + "Connected to database: " + DB_PATH, flush=True)