def _setup_axes(self):
"""Setup the xyctz axes, iterate over t axis by default
"""
self._init_axis_if_exists("x", self._get_metadata_property("width", default=0))
self._init_axis_if_exists("y", self._get_metadata_property("height", default=0))
self._init_axis_if_exists(
"c", len(self._get_metadata_property("channels", default=[])), min_size=2
)
self._init_axis_if_exists(
"t", len(self._get_metadata_property("frames", default=[]))
)
self._init_axis_if_exists(
"z", len(self._get_metadata_property("z_levels", default=[])), min_size=2
)
self._init_axis_if_exists(
"v",
len(self._get_metadata_property("fields_of_view", default=[])),
min_size=2,
)
if len(self.sizes) == 0:
raise EmptyFileError("No axes were found for this .nd2 file.")
# provide the default
self.iter_axes = self._guess_default_iter_axis()
self._register_get_frame(self.get_frame_2D, "yx")
def _setup_axes(self):
"""Setup the xyctz axes, iterate over t axis by default
"""
self._init_axis_if_exists(
'x', self._get_metadata_property("width", default=0))
self._init_axis_if_exists(
'y', self._get_metadata_property("height", default=0))
self._init_axis_if_exists('c',
len(
self._get_metadata_property("channels",
default=[])),
min_size=2)
self._init_axis_if_exists(
't', len(self._get_metadata_property("frames", default=[])))
self._init_axis_if_exists('z',
len(
self._get_metadata_property("z_levels",
default=[])),
min_size=2)
self._init_axis_if_exists(
'v',
len(self._get_metadata_property("fields_of_view", default=[])),
min_size=2)
if len(self.sizes) == 0:
raise EmptyFileError("No axes were found for this .nd2 file.")
# provide the default
self.iter_axes = self._guess_default_iter_axis()
self._register_get_frame(self.get_frame_vczyx, 'vczyx')
self._register_get_frame(self.get_frame_vczyx, 'vzyx')
self._register_get_frame(self.get_frame_vczyx, 'vcyx')
self._register_get_frame(self.get_frame_vczyx, 'vyx')
self._register_get_frame(self.get_frame_vczyx, 'czyx')
self._register_get_frame(self.get_frame_vczyx, 'cyx')
self._register_get_frame(self.get_frame_vczyx, 'zyx')
self._register_get_frame(self.get_frame_vczyx, 'yx')