Python Clip Examples

Example #1

 def test_paired(self):
     nesoni.Clip(
         output / 'clip',
         pairs=[[data / 'reads_1.txt.gz', data / 'reads_2.txt.gz']],
     ).run()

Example #2

File: test_nesoni.py Project: promodel/nesoni

 def test_trim_to(self):
     nesoni.Clip(
         output / 'clip-to',
         pairs=[[data / 'reads_1.txt.gz', data / 'reads_2.txt.gz']],
         trim_to=30,
     ).run()

Example #3

 def test_single(self):
     nesoni.Clip(
         output / 'clip',
         reads=[data / 'reads_1.txt.gz'],
     ).run()

Example #4

File: test_nesoni.py Project: promodel/nesoni

 def test_custom_adapters(self):
     nesoni.Clip(
         output / 'clip-custom',
         reads=[data / 'reads_1.txt.gz'],
         adaptor_file=data / 'test_adaptors.fa',
     ).run()