def run_exploration(path, begin, end): parameter_test.param_co_simulation['nb_MPI_nest'] = 0 parameter_test.param_nest_topology['nb_region'] = 1 parameter_test.param_tvb_monitor['Raw'] = True run_exploration_2D(path, parameter_test, { 'b': [10.0, 7.0, 1.0], 'mean_I_ext': [0.0] }, begin, end)
def run_exploration(path,begin,end,nb_VP,nb_mpi,cluster): parameter_test.param_co_simulation['co-simulation']=True parameter_test.param_co_simulation['cluster']=cluster parameter_test.param_co_simulation['nb_MPI_nest']=nb_mpi parameter_test.param_nest['total_num_virtual_procs']=nb_VP parameter_test.param_nest_topology['nb_neuron_by_region'] = 100 # NOTE we changed it from 100 parameter_test.param_co_simulation['id_region_nest']=[1] # NOTE we changed it from [1,2] parameter_test.param_co_simulation['synchronization']=3.5 parameter_test.param_nest_background['multimeter']=False parameter_test.param_nest_background['record_spike']=False run_exploration_2D(path, parameter_test, {'g':[1.0], 'mean_I_ext': [0.0]}, begin, end)
def run_exploration(path, begin, end): parameter_test.path = "/home/example/parameter/data_mouse/" parameter_test.param_co_simulation['co-simulation'] = True parameter_test.param_co_simulation[ 'nb_MPI_nest'] = MPI.COMM_WORLD.Get_size() parameter_test.param_nest['total_num_virtual_procs'] = 10 parameter_test.param_co_simulation['id_region_nest'] = [1, 2] parameter_test.param_co_simulation['synchronization'] = 3.5 run_exploration_2D(path, parameter_test, { 'g': [1.0], 'mean_I_ext': [0.0] }, begin, end)
def run_exploration(path, begin, end): parameter_test.param_co_simulation['co-simulation'] = False parameter_test.param_co_simulation['nb_MPI_nest'] = 1 parameter_test.param_nest['total_num_virtual_procs'] = 10 parameter_test.param_co_simulation['id_region_nest'] = [0, 1, 2] parameter_test.param_co_simulation['synchronization'] = 20.0 parameter_test.param_record_MPI['save_step'] = 10 parameter_test.param_co_simulation['level_log'] = 1 parameter_test.param_co_simulation['record_MPI'] = True run_exploration_2D(path, parameter_test, { 'g': np.arange(0.0, 1.0, 0.5), 'mean_I_ext': np.arange(0.0, 100.0, 50.0) }, begin, end)
def run_exploration(path, begin, end): parameter_test.param_co_simulation['co-simulation'] = True parameter_test.param_co_simulation[ 'nb_MPI_nest'] = 4 # adapt the simulation for different number of rank parameter_test.param_nest[ 'total_num_virtual_procs'] = parameter_test.param_co_simulation[ 'nb_MPI_nest'] parameter_test.param_co_simulation['id_region_nest'] = [ 1, 2 ] # replace 2 region by nest simulation parameter_test.param_co_simulation[ 'synchronization'] = 3.5 # synchronization between Nest and TVB run_exploration_2D(path, parameter_test, { 'g': np.arange(1.0, 1.2, 0.5), 'mean_I_ext': [0.0] }, begin, end)
def run_exploration(path, begin, end): run_exploration_2D(path, parameter_test, { 'g': np.arange(0.0, 1.0, 0.5), 'mean_I_ext': np.arange(0.0, 100.0, 50.0) }, begin, end)
def run_exploration(path, begin, end): parameter_test.param_co_simulation['nb_MPI_nest'] = 0 run_exploration_2D(path, parameter_test, { 'g': np.arange(0.0, 1.0, 0.5), 'mean_I_ext': np.arange(0.0, 100.0, 50.0) }, begin, end)
def run_exploration(path, begin, end): parameter_test.param_nest_topology['nb_region'] = 1 run_exploration_2D(path, parameter_test, { 'b': [10.0, 7.0, 1.0], 'mean_I_ext': [0.0] }, begin, end)