def stack_exchange_interactive_graph():
import numpy as np
import matplotlib.pyplot as plt
plt.ion()
plt.ion()
import networkx
import netgraph # pip install netgraph
# Construct sparse, directed, weighted graph
total_nodes = 20
weights = np.random.rand(total_nodes, total_nodes)
connection_probability = 0.1
is_connected = np.random.rand(total_nodes,
total_nodes) <= connection_probability
graph = np.zeros((total_nodes, total_nodes))
graph[is_connected] = weights[is_connected]
# construct a networkx graph
g = networkx.from_numpy_array(graph, networkx.DiGraph)
# decide on a layout
pos = networkx.layout.spring_layout(g)
# Create an interactive plot.
# NOTE: you must retain a reference to the object instance!
# Otherwise the whole thing will be garbage collected after the initial draw
# and you won't be able to move the plot elements around.
plot_instance = netgraph.InteractiveGraph(graph, node_positions=pos)
######## drag nodes around #########
# To access the new node positions:
node_positions = plot_instance.node_positions
def draw(self):
global pos, node_labels, plot_instance
pos = nx.layout.spring_layout(self)
node_labels = dict((node, gstr(node)) for node in self.nodes)
# nx.draw(self, pos, with_labels=True, labels=node_labels)
# nx.draw_networkx_edge_labels(
# self, pos, edge_labels=nx.get_edge_attributes(self, 'weight')
# )
plot_instance = netgraph.InteractiveGraph(self,
node_positions=pos,
node_labels=node_labels,
node_label_font_size=6)
import matplotlib.pyplot as plt
plt.ion()
import netgraph
plt.rcParams['axes.linewidth'] = 0.05 #set the value globally
plt.figure(figsize=(20, 10))
# Construct sparse, directed, weighted graph
# with positive and negative edges:
total_nodes = 10
weights = np.random.randn(total_nodes, total_nodes)
connection_probability = 0.2
is_connected = np.random.rand(total_nodes,
total_nodes) <= connection_probability
graph = np.zeros((total_nodes, total_nodes))
graph[is_connected] = weights[is_connected]
# Make a standard plot:
#netgraph.draw(graph)
# Create an interactive plot.
# NOTE: you must retain a reference to the object instance!
# Otherwise the whole thing will be garbage collected after the initial draw
# and you won't be able to move the plot elements around.
plot_instance = netgraph.InteractiveGraph(graph,
draw_arrows=False,
edge_color='black')
# The position of the nodes can be adjusted with the mouse.
# To access the new node positions:
node_positions = plot_instance.node_positions
plt.show(block=True)
def set_pos(g,
gtype='normal',
scale=1,
node_color='gray',
label_size=8,
initpos={}):
"""
Provides graphical interface to set graph node positions. If model is provided, it will also set the positions in the model object.
To work, this method must be opened in an external window, so change the IPython before use usings %matplotlib qt' (or '%matplotlib osx')
Parameters
----------
g : networkx graph or model
normal or bipartite graph of the model of interest
gtype : 'normal' or 'bipartite', optional
Type of graph to plot. The default is 'normal'.
scale : float, optional
scale for the node sizes. The default is 1.
node_color : str, optional
color to use for the nodes. The default is 'gray'.
label_size : float, optional
size to use for the labels. The default is 8.
initpos : dict, optional
dict of initial positions for the labels (e.g. from nx.spring_layout). The default is {}.
Returns
-------
pos: dict
dict of node positions for use in graph plotting functions
"""
set_mdl = False
if not type(g) == nx.classes.graph.Graph:
mdl = g
set_mdl = True
if gtype == 'normal': g = mdl.graph
elif gtype == 'bipartite': g = mdl.bipartite
plt.ion()
fig = plt.figure()
if gtype == 'normal':
if not initpos: initpos = nx.shell_layout(g)
edgeflows = {}
for edge in g.edges:
flows = list(g.get_edge_data(edge[0], edge[1]).keys())
edgeflows[edge[0], edge[1]] = ''.join(flow for flow in flows)
plot_instance = netgraph.InteractiveGraph(
g,
node_size=20 * scale,
node_shape='s',
node_color=node_color,
node_edge_width=0,
node_positions=initpos,
edge_labels=edgeflows,
edge_label_font_size=label_size,
node_labels={n: n
for n in g.nodes},
node_label_font_size=label_size)
elif gtype == 'bipartite':
if not initpos: initpos = nx.spring_layout(g)
plot_instance = netgraph.InteractiveGraph(
g,
node_size=7 * scale,
node_color=node_color,
node_edge_width=0,
node_positions=initpos,
node_labels={n: n
for n in g.nodes},
node_label_font_size=label_size)
plt.title("Click and drag to place nodes.")
plt.xlabel("Close window to continue...")
plt.show(block=False)
t = 0
while plt.fignum_exists(fig.number):
plt.pause(0.1)
t += 0.1
if t < 0.2:
print(
"Cannot place nodes in inline version of plot. Use '%matplotlib qt' (or '%matplotlib osx') to open in external window"
)
pos = {
node: list(loc)
for node, loc in plot_instance.node_positions.items()
}
if set_mdl:
if gtype == 'normal': mdl.graph_pos = pos
elif gtype == 'bipartite': mdl.bipartite_pos = pos
return pos
G = nx.Graph()
G.add_edges_from(neighborship_dict.keys())
pos = nx.spring_layout(G, k = 0.5, iterations = 70)
nx.draw_networkx_labels(G, pos,labels=id_to_name(final_devices_list), font_size = 9, font_family = "sans-serif", font_weight = "bold")
nx.draw_networkx_edges(G, pos, width = 4, alpha = 0.4, edge_color = 'black')
nx.draw_networkx_edge_labels(G, pos, neighborship_dict, label_pos = 0.3, font_size = 6)
nx.draw(G, pos, node_size = 700, with_labels = False, node_color = 'red')
matp.show()
continue
elif user_choice == "4":
import netgraph
G = nx.Graph()
G.add_edges_from(neighborship_dict.keys())
interactive_graph = netgraph.InteractiveGraph(G)
node_positions = interactive_graph.node_positions
edge_list = interactive_graph.edge_list
node_labels = id_to_name(final_devices_list)
# add blank labels for nodes that could not be querried by SNMP
for node in node_positions.keys():
if node not in node_labels.keys(): node_labels[node]=''
edge_labels = {key:neighborship_dict[key] for key in neighborship_dict.keys() if key in edge_list}
interactive_graph.draw_node_labels(node_labels, node_positions,node_label_font_size=9)
matp.show()
elif user_choice == "5":
def print_graph(self) -> None:
""" Interactive visual graph opens in new window. """
# Ensure proper packages available and imported
if not has_nx:
print("In order to use this function, you must pip install networkx")
return
if not has_mpl:
print("In order to use this function, you must pip install matplotlib")
return
# Used to store the labels for nodes and edges
node_labels = {}
edge_labels = {}
# Stores graph variable
G = nx.DiGraph()
# Draws each node in graph
for node in self.nodes.values():
node_name = node.name
# Name followed by ! if asserted in the current context
if node in self.current_context:
node_name += '!'
node_labels[node_name] = node_name
G.add_node(node_name)
# Draws edges to other nodes to which node has arcs formed by slots (cables)
if isinstance(node, Molecular):
for i in range(len(node.frame.filler_set)):
fillers = node.frame.filler_set[i]
name = node.frame.caseframe.slots[i].name
# Prints min and max with arc name
if isinstance(node, MinMaxOpNode) and name in ["threshargs", "andorargs"]:
name += " ({}, {})".format(node.min, node.max)
# Nor wire (single down cable) displayed as not
if name == "nor" and len(fillers) == 1:
name = "not"
for filler in fillers.nodes:
filler_name = filler.name
if filler in self.current_context:
filler_name += '!'
# If multiple down arcs go from one node to another, display them as one
# edge with comma-separated arc names
if (node_name, filler_name) in edge_labels:
edge_labels[(node_name, filler_name)] += ", " + name
else:
G.add_edge(node_name, filler_name)
edge_labels[(node_name, filler_name)] = name
# Draws edges to other nodes to which node has arcs formed by restrictions
if isinstance(node, Variable):
for restriction_node in node.restriction_set:
restriction_name = restriction_node.name
if restriction_node in self.current_context:
restriction_name += '!'
if (node_name, restriction_name) in edge_labels:
edge_labels[(node_name, restriction_name)] += ", restriction"
else:
G.add_edge(node_name, restriction_name)
edge_labels[(node_name, restriction_name)] = "restriction"
# Draws edges to other nodes to which node has arcs formed by dependencies
if isinstance(node, Indefinite):
for dependency_node in node.dependency_set:
dependency_name = dependency_node.name
if dependency_node in self.current_context:
dependency_name += '!'
if (node_name, dependency_name) in edge_labels:
edge_labels[(node_name, dependency_name)] += ", dependency"
else:
G.add_edge(node_name, dependency_name)
edge_labels[(node_name, dependency_name)] = "dependency"
# Layout on which to draw nodes
pos = nx.circular_layout(G)
# Draggable nodes in graph
if has_ng and self.nodes != {}:
# This is a buggy module.
# If you want adjustable graphs, you have to do an assignment for some reason
_ = ng.InteractiveGraph(G, pos, node_size=10, node_label_font_size=12.0, node_color='grey', alpha=0.8,
node_labels=node_labels, edge_labels=edge_labels, font_color='black')
# Static graph
else:
nx.draw_networkx_edge_labels(G, pos, edge_labels=edge_labels, font_color='black')
nx.draw_networkx(G, pos, node_size=800, node_color='grey', alpha=0.8)
# Displays graph
plt.subplots_adjust(left=0.0, right=1.0, top=1.0, bottom=0.0)
plt.show()