def test_scipy_pagerank(self):
G = self.G
p = networkx.pagerank_scipy(G, alpha=0.9, tol=1.e-08)
for n in G:
assert_almost_equal(p[n], G.pagerank[n], places=4)
personalize = dict((n, random.random()) for n in G)
p = networkx.pagerank_scipy(G, alpha=0.9, tol=1.e-08,
personalization=personalize)
def test_scipy_pagerank(self):
G = self.G
p = networkx.pagerank_scipy(G, alpha=0.9, tol=1.e-08)
for n in G:
assert_almost_equal(p[n], G.pagerank[n], places=4)
personalize = dict((n, random.random()) for n in G)
p = networkx.pagerank_scipy(G, alpha=0.9, tol=1.e-08,
personalization=personalize)
def test_scipy_pagerank(self):
G = self.G
p = nx.pagerank_scipy(G, alpha=0.9, tol=1.0e-08)
for n in G:
assert p[n] == pytest.approx(G.pagerank[n], abs=1e-4)
personalize = {n: random.random() for n in G}
p = nx.pagerank_scipy(G, alpha=0.9, tol=1.0e-08, personalization=personalize)
nstart = {n: random.random() for n in G}
p = nx.pagerank_scipy(G, alpha=0.9, tol=1.0e-08, nstart=nstart)
for n in G:
assert p[n] == pytest.approx(G.pagerank[n], abs=1e-4)
def test_scipy_pagerank(self):
G = self.G
try:
import scipy
except ImportError:
raise SkipTest("scipy not available.")
p = networkx.pagerank_scipy(G, alpha=0.9, tol=1.0e-08)
for n in G:
assert_almost_equal(p[n], G.pagerank[n], places=4)
personalize = dict((n, random.random()) for n in G)
p = networkx.pagerank_scipy(G, alpha=0.9, tol=1.0e-08, personalization=personalize)
assert_raises(networkx.NetworkXError, networkx.pagerank_scipy, G, max_iter=0)
def test_scipy_pagerank(self):
G = self.G
p = networkx.pagerank_scipy(G, alpha=0.9, tol=1.0e-08)
for n in G:
assert almost_equal(p[n], G.pagerank[n], places=4)
personalize = {n: random.random() for n in G}
p = networkx.pagerank_scipy(
G, alpha=0.9, tol=1.0e-08, personalization=personalize
)
nstart = {n: random.random() for n in G}
p = networkx.pagerank_scipy(G, alpha=0.9, tol=1.0e-08, nstart=nstart)
for n in G:
assert almost_equal(p[n], G.pagerank[n], places=4)
def test_scipy_pagerank(self):
G=self.G
try:
import scipy
except ImportError:
raise SkipTest('scipy not available.')
p=networkx.pagerank_scipy(G,alpha=0.9,tol=1.e-08)
for n in G:
assert_almost_equal(p[n],G.pagerank[n],places=4)
personalize = dict((n,random.random()) for n in G)
p=networkx.pagerank_scipy(G,alpha=0.9,tol=1.e-08,
personalization=personalize)
assert_raises(networkx.NetworkXError,networkx.pagerank_scipy,G,
max_iter=0)
def ExtractSentence(text,k):
"根据文本内容获得句子重要性排名"
print('开始句子重要性排名')
sent_tokens = nlp.sent_tokenize(text)
#可以加入限制条件，如果句子中的实体数少于阈值则放弃这个句子，等等，待扩展
sent_tokens = filter_sent(sent_tokens,1)
#建图结构
text_graph = graph_construct(sent_tokens)
#这里pagerank有三种，一种是正常的pg，一种是利用numpy还有一种就是下面的利用scipy的稀疏矩阵
print('start to calculate')
#cal_gr_page_rank = nx.pagerank(text_graph,weight='weight')
cal_gr_page_rank = nx.pagerank_scipy(text_graph)
print('ended')
#按照最后的score得分进行排序，获得前K个，待扩展，使之取不超250个词的句子
sents = sorted(cal_gr_page_rank,key = cal_gr_page_rank.get, reverse=True)
kth = get_sum_sents(sents,250)
#topK
str_tmp_list = []
for sidx in range(kth):
str_tmp = sents[sidx]
str_tmp += '[%.4f]'%(cal_gr_page_rank[sents[sidx]])
str_tmp_list.append(str_tmp)
print_score(str_tmp_list)
return ' '.join(sents[:kth])
def candidate_weighting(self, threshold=0.25, method='average'):
""" Candidate weight calculation using random walk.
Args:
threshold (float): the minimum similarity for clustering,
defaults to 0.25.
method (str): the linkage method, defaults to average.
"""
# cluster the candidates
self.topic_clustering(threshold=threshold, method=method)
# build the topic graph
self.build_topic_graph()
# compute the word scores using random walk
w = nx.pagerank_scipy(self.graph)
# loop throught the topics
for i, topic in enumerate(self.topics):
# get first occuring candidate from topic
offsets = [self.candidates[t].offsets[0] for t in topic]
first = offsets.index(min(offsets))
self.weights[topic[first]] = w[i]
def compute_centrality(star_dict, edge_dict):
#build up a nx graph
galaxy = networkx.Graph()
for v, vertex in star_dict.iteritems():
galaxy.add_node(v)
for v, neighbors in edge_dict.iteritems():
for n in neighbors:
galaxy.add_edge(v,n)
print "betweenness"
betweenness_map = networkx.current_flow_betweenness_centrality(galaxy)
betweenness_map = normalize(betweenness_map)
for key, value in betweenness_map.iteritems():
star_dict[key]['betweenness'] = value
print "closeness"
closeness_map = networkx.current_flow_closeness_centrality(galaxy)
closeness_map = normalize(closeness_map)
for key, value in closeness_map.iteritems():
star_dict[key]['closeness'] = value
print "pagerank"
pagerank_map = networkx.pagerank_scipy(galaxy)
pagerank_map = normalize(pagerank_map)
for key, value in pagerank_map.iteritems():
star_dict[key]['pagerank'] = value
def main():
print '- updating pagerank :'
# DB-CONNECT
conn = sqlite3.connect(db_path)
c = conn.cursor()
# DB-EXECUTE
# get subgraph
r = c.execute("SELECT blog_name, source_title FROM subgraph")
graph = {key : value.split() for (key, value) in r}
G = nx.DiGraph(graph)
pr = nx.pagerank_scipy(G, alpha=0.85)
# normalise
ranks = pr.values()
rank_min, rank_max = min(ranks), max(ranks)
for k in pr: pr[k] = round(((pr[k] - rank_min) / (rank_max - rank_min)), 4)
# update table
for blog in pr:
c.execute("UPDATE tumblr_model SET pagerank=? WHERE blog_name=?", [pr[blog], blog])
# DB-COMMIT AND CLOSE
conn.commit()
conn.close()
# sorting, optional
pr_sorted = sorted(pr.items(), key=operator.itemgetter(1))
print " %s is the most popular domain in the network"%pr_sorted[-1:][0][0]
print ''
def candidate_weighting(self, window=10, pos=None, normalized=False):
""" Candidate weight calculation using random walk.
Args:
window (int): the window within the sentence for connecting two
words in the graph, defaults to 10.
pos (set): the set of valid pos for words to be considered as
nodes in the graph, defaults to (NN, NNS, NNP, NNPS, JJ,
JJR, JJS).
normalized (False): normalize keyphrase score by their length,
defaults to False
"""
# define default pos tags set
if pos is None:
pos = set(['NN', 'NNS', 'NNP', 'NNPS', 'JJ', 'JJR', 'JJS'])
# build the word graph
self.build_word_graph(window=window, pos=pos)
# compute the word scores using random walk
w = nx.pagerank_scipy(self.graph)
# loop through the candidates
for k in self.candidates.keys():
tokens = self.candidates[k].lexical_form
self.weights[k] = sum([w[t] for t in tokens])
if normalized:
self.weights[k] /= len(tokens)
def get_keyphrases(self, document, speakers = None, use_main = False, topX = 5, maxlen = 50, include_scores = False):
""" Get keyphrases from a document using LexRank
Speakers, use_main use case similar to in keynet.py """
self.document = document
if speakers:
main, others = parse_doc_speakers(self.document, speakers)
if use_main:
self.document = main
else:
self.document = others
self.init_counts()
network_graph = self._build_graph()
ranked = nx.pagerank_scipy(network_graph)
ranked = [(val, text) for val, text in ranked.items()]
sort_ranked = sorted(ranked, key=lambda t: t[1], reverse=True)
if maxlen:
sort_ranked = [t for t in sort_ranked if len(t[0].split()) < maxlen]
if not include_scores:
sort_ranked = [s[0] for s in sort_ranked]
return sort_ranked[:topX]
def candidate_weighting(self, window=10, pos=None, normalized=False):
""" Candidate weight calculation using random walk.
Args:
window (int): the window within the sentence for connecting two
words in the graph, defaults to 10.
pos (set): the set of valid pos for words to be considered as
nodes in the graph, defaults to (NN, NNS, NNP, NNPS, JJ,
JJR, JJS).
normalized (False): normalize keyphrase score by their length,
defaults to False
"""
# define default pos tags set
if pos is None:
pos = set(['NN', 'NNS', 'NNP', 'NNPS', 'JJ', 'JJR', 'JJS'])
# build the word graph
self.build_word_graph(window=window, pos=pos)
# compute the word scores using random walk
w = nx.pagerank_scipy(self.graph, alpha=0.85, weight='weight')
# loop through the candidates
for k in self.candidates.keys():
tokens = self.candidates[k].lexical_form
self.weights[k] = sum([w[t] for t in tokens])
if normalized:
self.weights[k] /= len(tokens)
def findBestChilds(self, nodes, k=4):
n = len(nodes)
node_list = dict()
i = 0
for node in nodes:
node_list[i] = node
i += 1
self.stateGraph = np.zeros(shape=(n, n), dtype=np.byte)
[self.buildSubGraph(i, n, node_list) for i in range(n)]
try:
self.logger.debug(len(self.stateGraph))
h = (nx.pagerank_scipy(nx.Graph(self.stateGraph),
max_iter=100,
tol=1e-07))
res = list(sorted(h, key=h.__getitem__, reverse=True))
important = res[:k]
except:
self.logger.error('Graph is empty')
self.logger.error(sys.exc_info())
dereffed_list = set([self.sub(i, node_list) for i in important])
dereffed_list.discard(0)
dereffed_list.discard(1)
return list(dereffed_list)
def textrank_tagger(tokenized, w2v_model):
"""
TextRank based on cosine similarity between TF-IDF-reweighted w2v sentence sums.
"""
idf_weights = idf_weight_dict(tokenized)
original_indices, sent_representations = w2v_sentence_sums_tfidf(
tokenized, w2v_model, idf_weights)
distance_matrix = pairwise_distances(sent_representations, metric='cosine')
similarity_matrix = np.subtract(1, distance_matrix)
# Use PageRank algorithm on similarity matrix
nx_graph = nx.from_numpy_matrix(similarity_matrix)
# Convergence of graph (tolerance from TextRank paper)
scores = nx.pagerank_scipy(nx_graph, max_iter=100, tol=1e-04)
# For now, the number of summary-worthy sentences is set to ~33% of the sentences.
cutoff = len(tokenized) // 3
sorted_sentences = sorted([(scores[i], original_indices[i])
for i, s in enumerate(tokenized)],
reverse=True)
summary_indices = [index for score, index in sorted_sentences[:cutoff]]
labels = [
1 if i in summary_indices else 0 for i, _ in enumerate(tokenized)
]
return labels
def text_summary(doc, sent_count):
"""
Summarizes given text using word vectors and graph-based ranking.
Args:
doc: a spacy.Doc object
sent_count: number (/ratio) of sentences in the summary
Returns:
Text summary
"""
sents = list(doc.sents)
sent_graph = networkx.Graph()
sent_graph.add_nodes_from(idx for idx, sent in enumerate(sents))
for i, j in it.combinations(sent_graph.nodes_iter(), 2):
# Calculate cosine similarity of two sentences transformed to the interval [0,1]
similarity = (sents[i].similarity(sents[j]) + 1) / 2
if similarity != 0:
sent_graph.add_edge(i, j, weight=similarity)
sent_ranks = networkx.pagerank_scipy(sent_graph)
if 0 < sent_count < 1:
sent_count = round(sent_count * len(sent_ranks))
sent_count = int(sent_count)
top_indices = top_keys(sent_count, sent_ranks)
# Return the key sentences in chronological order
top_sents = map(lambda i: sents[i], sorted(top_indices))
return format_output(doc, list(top_sents))
def get_keyphrases(self, document, include_scores=False, maxlen=None):
""" Get keyphrases from a document using LexRank
Speakers, use_main use case similar to in keynet.py """
# Incoporate documnet being considered
self.document = document
# Initialize document counts, tfidif scores
self.init_counts()
# Build graph of sentences, edges are cossim
network_graph = self._build_graph()
# Run PageRank on the graph
ranked = nx.pagerank_scipy(network_graph)
ranked = [(val, text) for val, text in ranked.items()]
# Sort results by score
sort_ranked = sorted(ranked, key=lambda t: t[1], reverse=True)
# Keep only results up to some maximum length in tokens
if maxlen:
sort_ranked = [
t for t in sort_ranked if len(t[0].split()) < maxlen
]
# For outputting without scores
if not include_scores:
sort_ranked = [s[0] for s in sort_ranked]
return sort_ranked
def candidate_weighting(self, doc: Doc) -> List[Tuple[Candidate, float]]:
"""Compute the weighted score of each keyword candidate.
Args:
doc (Doc): doc.
Returns:
list of tuples, candidate with a score.
"""
res = []
C = doc._.kw_candidates
G = self.build_graph(doc)
W = nx.pagerank_scipy(G, alpha=self.cfg["alpha"], tol=self.cfg["tol"], weight="weight")
for i, topic in nx.get_node_attributes(G, "C").items():
offsets = [C[t].offsets[0] for t in topic]
if self.cfg["heuristic"] == "frequent":
freq = [len(C[t].surface_forms) for t in topic]
indexes = [j for j, f in enumerate(freq) if f == max(freq)]
indexes_offsets = [offsets[j] for j in indexes]
most_frequent = offsets.index(min(indexes_offsets))
res.append((C[topic[most_frequent]], W[i]))
else:
first = offsets.index(min(offsets))
res.append((C[topic[first]], W[i]))
res.sort(key=lambda x: x[1], reverse=True)
return res
def test_rank_time(self):
from pygrank.algorithms.pagerank import PageRank as ranker
from pygrank.algorithms.utils import preprocessor
import scipy.stats
nx_time = list()
test_time = list()
repeats = 50
for _ in range(repeats):
G = create_test_graph()
tic = time.clock()
ranker(to_scipy=preprocessor('col')).rank(G)
test_time.append(time.clock()-tic)
tic = time.clock()
nx.pagerank_scipy(G)
nx_time.append(time.clock()-tic)
self.assertLessEqual(scipy.stats.ttest_ind(nx_time, test_time)[1], 0.001, msg="PageRank time comparable to nx with p-value<0.001")
def pre_calculate(X, k=100, ntop=50, calculate_important=None):
""" Calculate the k-nearest neighbors matrix
Calculate Hubs or Pagerank for each points
"""
from sklearn.neighbors import NearestNeighbors
model = NearestNeighbors(n_neighbors=k, algorithm='ball_tree')
model.fit(X)
distances, indices = model.kneighbors()
if calculate_important is None:
top_important = []
else:
nn = model.kneighbors_graph(mode='distance')
g = nx.from_scipy_sparse_matrix(nn)
if calculate_important == 'pagerank':
pageranks = nx.pagerank_scipy(g)
top_important = sorted(pageranks, key=pageranks.get, reverse=True)
elif calculate_important == 'hubs':
hubs, authorities = nx.hits_scipy(g)
top_important = sorted(hubs, key=hubs.get, reverse=True)
return {
'distances': distances.tolist(),
'neighbors': list(map(lambda s: list(map(str, s)), indices)),
'importantPoints': list(map(str, top_important[:ntop])),
'infoMsg': 'Dataset size: {}'.format(X.shape)
}
def candidate_weighting(self, window=10, pos=None, normalized=False):
"""Keyphrase candidate ranking using the weighted variant of the
TextRank formulae. Candidates are scored by the sum of the scores of
their words.
Args:
window (int): the window within the sentence for connecting two
words in the graph, defaults to 10.
pos (set): the set of valid pos for words to be considered as nodes
in the graph, defaults to ('NOUN', 'PROPN', 'ADJ').
normalized (False): normalize keyphrase score by their length,
defaults to False.
"""
if pos is None:
pos = {'NOUN', 'PROPN', 'ADJ'}
# build the word graph
self.build_word_graph(window=window, pos=pos)
# compute the word scores using random walk
w = nx.pagerank_scipy(self.graph,
alpha=0.85,
tol=0.0001,
weight='weight')
# loop through the candidates
for k in self.candidates.keys():
tokens = self.candidates[k].lexical_form
self.weights[k] = sum([w[t] for t in tokens])
if normalized:
self.weights[k] /= len(tokens)
# use position to break ties
self.weights[k] += self.candidates[k].offsets[0] * 1e-8
def run_pagerank(self):
self.extract_filenamedict()
self.get_corr_matrix(self.corr_method)
pid_filter = self.get_pid_filter()
adj_mat = np.multiply(self.corr_mat, pid_filter)
adj_mat_values = adj_mat.values
st = time.time()
g = nx.DiGraph()
for i,ni in enumerate(adj_mat.index):
#print(i)
for j,nj in enumerate(adj_mat.columns):
if adj_mat_values[i][j] !=0:
g.add_edge(ni,nj, weight = adj_mat_values[i][j])
cost = time.time()- st
print('Time Cost to build the graph:', cost)
#run pagerank
st = time.time()
self.pr = nx.pagerank_scipy(g, alpha=self.alpha, personalization=self.filename2score, max_iter=300, tol=1.0e-12)
#print (pr)
print ('Time Cost to run pagerank:', time.time() - st)
def get_summary(self,
docs,
topK=5,
stopwords=None,
with_importance=False,
standard_name=True):
import networkx as nx
def sent_sim1(words1, words2):
if len(words1) <= 1 or len(words2) <= 1:
return 0.0
return (len(set(words1) & set(words2))) / (np.log2(len(words1)) +
np.log2(len(words2)))
# 使用standard_name,相似度可以基于实体链接的结果计算而更加准确
sents = [
self.seg(doc.strip(),
standard_name=standard_name,
stopwords=stopwords) for doc in docs
]
sents = [sent for sent in sents if len(sent) > 0]
G = nx.Graph()
for u, v in combinations(range(len(sents)), 2):
G.add_edge(u, v, weight=sent_sim1(sents[u], sents[v]))
pr = nx.pagerank_scipy(G)
pr_sorted = sorted(pr.items(), key=lambda x: x[1], reverse=True)
if with_importance:
return [(docs[i], imp) for i, imp in pr_sorted[:topK]]
else:
return [docs[i] for i, rank in pr_sorted[:topK]]
def rooted_pagerank(G, root, alpha=0.85, beta=0, weight='weight'):
"""Return the rooted PageRank of all nodes with respect to node `root`
Parameters
----------
G : a networkx.(Di)Graph
network to compute PR on
root : a node from the network
the node that will be the starting point of all random walks
alpha : float
PageRank probability that we will advance to a neighbour of the
current node in a random walk
beta : float or int
Normally, we return to the root node with probability 1 - alpha.
With this parameter, we can also advance to a random other node in the
network with probability beta. Thus, we get back to the root node with
probability 1 - alpha - beta. This is off (0) by default.
weight : string or None
The edge attribute that holds the numerical value used for
the edge weight. If None then treat as unweighted.
"""
personalization = dict.fromkeys(G, beta)
personalization[root] = 1 - beta
return networkx.pagerank_scipy(G, alpha, personalization, weight=weight)
def candidate_weighting(self,
threshold=0.74,
method='average',
alpha=1.1):
""" Candidate weight calculation using random walk.
Args:
threshold (float): the minimum similarity for clustering,
defaults to 0.25.
method (str): the linkage method, defaults to average.
alpha (float): hyper-parameter that controls the strength of the
weight adjustment, defaults to 1.1.
"""
# cluster the candidates
self.topic_clustering(threshold=threshold, method=method)
# build the topic graph
self.build_topic_graph()
if alpha > 0.0:
self.weight_adjustment(alpha)
# compute the word scores using random walk
self.weights = nx.pagerank_scipy(self.graph)
def findBestChilds(self,nodes,k = 4):
n = len(nodes)
node_list = dict()
i = 0
for node in nodes:
node_list[i] = node
i += 1
self.stateGraph = np.zeros(shape=(n, n), dtype=np.byte)
[self.buildSubGraph(i, n, node_list) for i in range(n)]
try:
self.logger.debug (len(self.stateGraph))
h = (nx.pagerank_scipy(nx.Graph(self.stateGraph), max_iter=100, tol=1e-07))
res = list(sorted(h, key=h.__getitem__, reverse=True))
important = res[:k]
except:
self.logger.error ('Graph is empty')
self.logger.error (sys.exc_info())
dereffed_list = set([self.sub(i, node_list) for i in important])
if len(dereffed_list) > 1:
dereffed_list.discard(0)
dereffed_list.discard(1)
return list(dereffed_list)
def create_node_embeddings(graph, neighborhoods):
"""
Creates node "embeddings" based on the degrees of neighboring vertices and approximate
centrality measures
"""
num_nodes = graph.number_of_nodes()
embeddings = np.zeros(shape=(num_nodes, 2 * (len(neighborhoods) - 1) + 2), dtype=float)
eigen = nx.eigenvector_centrality_numpy(graph)
pagerank = nx.pagerank_scipy(graph, alpha=0.85)
out_neighbors = []
in_neighbors = []
for i in range(1, len(neighborhoods)):
out_neighbors.append(neighborhoods[i].sum(axis=1, dtype=float))
in_neighbors.append(neighborhoods[i].sum(axis=0, dtype=float))
for i, node in enumerate(graph.nodes()):
for j in range(len(out_neighbors)):
embeddings[i][2*j] = out_neighbors[j][i, 0] / graph.number_of_nodes()
embeddings[i][2*j+1] = in_neighbors[j][0, i] / graph.number_of_nodes()
embeddings[i][-2] = eigen[node]
embeddings[i][-1] = pagerank[node]
return np.array(embeddings)
def embed(self, network):
""" Create an embedding of the network
Args:
network (scipy sparse matrix): Sparse network adjacency matrix .
Returns:
scipy sparse matrix: Symbolic node embedding.
"""
logging.info("Generating and hashing random walks")
hashes = self.generate_walk_hashes(network)
# Rank nodes
pagerank_scores = nx.pagerank_scipy(
nx.from_scipy_sparse_matrix(network))
ranked_features = np.argsort(
[pagerank_scores[i] for i in range(len(pagerank_scores))])[::-1]
logging.info("Generating similarity matrix")
if self.fixed_dimension:
embedding = self.generate_similarity_fixed(
hashes,
ranked_features[:min(self.dimension, network.shape[0])])
else:
embedding = self.generate_similarity_matrix(
hashes, ranked_features).tocsr()
# Check if embedding size is less then tau
assert (not sparse.issparse(embedding)) or len(
embedding.data) <= (self.dimension * network.shape[0])
logging.info("Embedding done")
return embedding
def documentPagerankPrediction(G, dataset, synsets_dictionary):
predicted = []
for d in dataset:
pre = []
near = set()
to_add = {}
for l in d:
near.update(synsets_dictionary[l].keys())
to_add.update({l: synsets_dictionary[l]})
TG = extendGraph(G, to_add, document_graph=False)
pr = nx.pagerank_scipy(TG, personalization={n: 1 for n in near})
for l in d:
max_prob = 0
best_syn = 0
for synsets in synsets_dictionary[l].keys():
rank = pr[synsets]
if rank > max_prob:
max_prob = rank
best_syn = synsets
if best_syn == 0:
best_syn = np.random.choice(list(near))
assert (best_syn != 0)
pre.append(best_syn)
predicted.append(pre)
return predicted
def test_pagerank_by_hand():
graph = Graph('gr', 'gr.xml', 4)
graph.add_node(Node(0, LabelNodeLetter(0, 0)))
graph.add_node(Node(1, LabelNodeLetter(0, 0)))
graph.add_node(Node(2, LabelNodeLetter(0, 0)))
graph.add_node(Node(3, LabelNodeLetter(0, 0)))
graph.add_edge(Edge(0, 1, LabelEdge(0)))
graph.add_edge(Edge(1, 2, LabelEdge(0)))
graph.add_edge(Edge(2, 3, LabelEdge(0)))
pagerank = PageRank()
results = pagerank.calc_centrality_score(graph)
results = np.asarray(results)
graph2 = nx.Graph()
graph2.add_node(1)
graph2.add_node(2)
graph2.add_node(3)
graph2.add_node(4)
graph2.add_edge(1, 2)
graph2.add_edge(2, 3)
graph2.add_edge(3, 4)
expected = np.array([val for _, val in nx.pagerank_scipy(graph2).items()])
print(results)
assert np.linalg.norm(results - expected) < 1e-6
def get_summary(self, docs, topK=5, stopwords=None, with_importance=False, standard_name=True,
maxlen=None, avoid_repeat=False):
"""
使用Textrank算法得到文本中的关键句
:param docs: str句子列表
:param topK: 选取几个句子, 如果设置了maxlen，则优先考虑长度
:param stopwords: 在算法中采用的停用词
:param with_importance: 返回时是否包括算法得到的句子重要性
:param standard_name: 如果有entity_mention_list的话，在算法中正规化实体名，一般有助于提升算法效果
:param maxlen: 设置得到的摘要最长不超过多少字数，如果已经达到长度限制但未达到topK句也会停止
:param avoid_repeat: 使用MMR principle惩罚与已经抽取的摘要重复的句子，避免重复
:return: 句子列表，或者with_importance=True时，（句子，分数）列表
"""
assert topK > 0
import networkx as nx
maxlen = float('inf') if maxlen is None else maxlen
# 使用standard_name,相似度可以基于实体链接的结果计算而更加准确
sents = [self.seg(doc.strip(), standard_name=standard_name, stopwords=stopwords) for doc in docs]
sents = [sent for sent in sents if len(sent) > 0]
G = nx.Graph()
for u, v in combinations(range(len(sents)), 2):
G.add_edge(u, v, weight=sent_sim_textrank(sents[u], sents[v]))
pr = nx.pagerank_scipy(G)
pr_sorted = sorted(pr.items(), key=lambda x: x[1], reverse=True)
if not avoid_repeat:
ret = []
curr_len = 0
for i, imp in pr_sorted[:topK]:
curr_len += len(docs[i])
if curr_len > maxlen: break
ret.append((docs[i], imp) if with_importance else docs[i])
return [ ]
else:
assert topK <= len(sents)
ret = []
curr_len = 0
curr_sumy_words = []
candidate_ids = list(range(len(sents)))
i, imp = pr_sorted[0]
curr_len += len(docs[i])
if curr_len > maxlen:
return ret
ret.append((docs[i], imp) if with_importance else docs[i])
curr_sumy_words.extend(sents[i])
candidate_ids.remove(i)
for iter in range(topK-1):
importance = [pr[i] for i in candidate_ids]
norm_importance = scipy.special.softmax(importance)
redundancy = np.array([sent_sim_cos(curr_sumy_words, sents[i]) for i in candidate_ids])
scores = 0.6*norm_importance - 0.4*redundancy
id_in_cands = np.argmax(scores)
i, imp = candidate_ids[id_in_cands], importance[id_in_cands]
curr_len += len(docs[i])
if curr_len > maxlen:
return ret
ret.append((docs[i], imp) if with_importance else docs[i])
curr_sumy_words.extend(sents[i])
del candidate_ids[id_in_cands]
return ret
def text_summary(doc, sent_count):
"""
Summarizes given text using word vectors and graph-based ranking.
Args:
doc: a spacy.Doc object
sent_count: number (/ratio) of sentences in the summary
Returns:
Text summary
"""
sents = list(doc.sents)
sent_graph = networkx.Graph()
sent_graph.add_nodes_from(idx for idx, sent in enumerate(sents))
for i, j in it.combinations(sent_graph.nodes_iter(), 2):
# Calculate cosine similarity of two sentences transformed to the interval [0,1]
similarity = (sents[i].similarity(sents[j]) + 1) / 2
if similarity != 0:
sent_graph.add_edge(i, j, weight=similarity)
sent_ranks = networkx.pagerank_scipy(sent_graph)
if 0 < sent_count < 1:
sent_count = round(sent_count * len(sent_ranks))
sent_count = int(sent_count)
top_indices = top_keys(sent_count, sent_ranks)
# Return the key sentences in chronological order
top_sents = map(lambda i: sents[i], sorted(top_indices))
return format_output(doc, list(top_sents))
def rooted_pagerank(G, root, alpha=0.85, beta=0, weight='weight'):
"""Return the rooted PageRank of all nodes with respect to node `root`
Parameters
----------
G : a networkx.(Di)Graph
network to compute PR on
root : a node from the network
the node that will be the starting point of all random walks
alpha : float
PageRank probability that we will advance to a neighbour of the
current node in a random walk
beta : float or int
Normally, we return to the root node with probability 1 - alpha.
With this parameter, we can also advance to a random other node in the
network with probability beta. Thus, we get back to the root node with
probability 1 - alpha - beta. This is off (0) by default.
weight : string or None
The edge attribute that holds the numerical value used for
the edge weight. If None then treat as unweighted.
"""
personalization = dict.fromkeys(G, beta)
personalization[root] = 1 - beta
return networkx.pagerank_scipy(G, alpha, personalization, weight=weight)
def create_features(self, G_train, edge_bunch):
i = 0
X = []
page_rank = nx.pagerank_scipy(G_train)
for pair in edge_bunch:
commmon_neighbors = len(
list(nx.common_neighbors(G_train, pair[0], pair[1])))
jaccard_coefficient = nx.jaccard_coefficient(G_train,
[pair]).next()[2]
adamic_adar = nx.adamic_adar_index(G_train, [pair]).next()[2]
degree_0 = nx.degree(G_train, pair[0])
degree_1 = nx.degree(G_train, pair[1])
prod = degree_0 * degree_1
page_rank_0 = page_rank[pair[0]]
page_rank_1 = page_rank[pair[1]]
f = [
degree_0,
degree_1,
prod,
commmon_neighbors,
jaccard_coefficient,
adamic_adar,
page_rank_0,
page_rank_1,
]
X.append(f)
i += 1
if i % 1000000 == 0:
print(i)
return np.array(X)
def random_walk_word_scoring(self):
"""Compute a random walk ranking on the words using the power method.
"""
G = nx.Graph()
# loop through the sentences to build the graph
for i, sentence in enumerate(self.sentences):
nodes = set([])
for words, offset in sentence.candidates:
for w in words:
nodes.add(w)
# add the missing nodes to the graph
for node in nodes:
if not node in G:
G.add_node(node)
# add the edges to the graph
for n1, n2 in combinations(nodes, 2):
if not G.has_edge(n1, n2):
G.add_edge(n1, n2, weight=0)
G[n1][n2]['weight'] += 1.0
# return the random walk scores
return self.normalize(nx.pagerank_scipy(G))
def calculate_weighted_page_rank(
graph: Union[nx.MultiDiGraph, nx.MultiGraph, nx.Graph, nx.DiGraph],
weight: str = "weight",
) -> OrderedDict:
"""
Calculate Page Rank for ARRG.
Parameters
----------
graph : networkx.DiGraph
Graph of aspect-aspect relation ARRG.
weight : str, optional
Name of edge attribute that consists of weight for an edge. it is
used to calculate Weighted version of Page Rank.
Returns
-------
page_ranks : OrderedDict
Page Rank values for ARRG.
"""
logger.info("Weighted Page Rank calculation starts.")
page_ranks = nx.pagerank_scipy(graph, weight=weight)
logger.info("Weighted Page Rank calculation ended.")
return OrderedDict(
sorted(page_ranks.items(), key=itemgetter(1), reverse=True))
def test_empty_scipy(self):
try:
import scipy
except ImportError:
raise SkipTest('scipy not available.')
G = networkx.Graph()
assert_equal(networkx.pagerank_scipy(G), {})
def test_empty_scipy(self):
try:
import scipy
except ImportError:
raise SkipTest("scipy not available.")
G = networkx.Graph()
assert_equal(networkx.pagerank_scipy(G), {})
def candidate_weighting(self, doc: Doc) -> List[Tuple[Candidate, float]]:
"""Compute the weighted score of each keyword candidate.
Args:
doc (Doc): doc.
Returns:
list of tuples, candidate with a score.
"""
res = []
G = self.build_graph(doc)
W = nx.pagerank_scipy(G, alpha=self.cfg["alpha"], tol=self.cfg["tol"])
for candidate in doc._.kw_candidates:
chunk_len = len(candidate.lexical_form)
non_lemma = 0
rank = 0.0
for t in candidate.lexical_form:
if t in W:
rank += W[t]
else:
non_lemma += 1
non_lemma_discount = chunk_len / (chunk_len + (2.0 * non_lemma) + 1.0)
candidate_w = np.sqrt(rank / (chunk_len + non_lemma)) * non_lemma_discount
candidate_w += candidate.offsets[0] * 1e-8 # break ties according to position in text
res.append((candidate, candidate_w))
res.sort(key=lambda x: x[1], reverse=True)
return res
def generate_global_zscore(full_graph: pd.DataFrame, edgelist: pd.DataFrame, path: str, flag=False):
"""
Function that generates a dictionary with all the zscore of movies. If flag is true, generate file,
else only reads the file
:param full_graph: full graph of the movie dataset
:param path: path to save the generated DataFrame
:param flag: True to generate file of DataFrame with global zscores, False to read it
:return: dictionary with prop and obj keys and count and zscores as columns
"""
if flag:
full_slice = full_graph[['prop', 'obj']]
full_split_dfs = pd.DataFrame()
copy = full_graph.copy()
copy['origin'] = ['M' + x for x in copy.index.astype(str)]
copy['destination'] = copy['obj']
full_edgelist = pd.concat([edgelist, copy[['origin', 'destination']]])
# create graph
G = nx.from_pandas_edgelist(full_edgelist, 'origin', 'destination')
pr_np = nx.pagerank_scipy(G, max_iter=1000)
for prop in full_slice['prop'].unique():
df_prop = full_slice[full_slice['prop'] == prop]
df_gzscore = df_prop.copy()
df_gzscore['count'] = df_prop.groupby(by='obj')['obj'].transform('count')
df_gzscore['global_zscore'] = (df_gzscore['count'] - df_gzscore['count'].mean()) / df_gzscore['count'].std()
full_split_dfs = pd.concat([full_split_dfs, df_gzscore])
full_split_dfs['pr'] = full_split_dfs.apply(lambda x: pr_np[x['obj']], axis=1)
full_split_dfs['pr_zscore'] = (full_split_dfs['pr'] - full_split_dfs['pr'].mean()) / full_split_dfs['pr'].std()
full_split_dfs.to_csv(path, mode='w', header=True, index=False)
return pd.read_csv(path, usecols=['prop', 'obj', 'count', 'global_zscore', 'pr', 'pr_zscore']).set_index(['prop', 'obj']).to_dict()
def graph_stats(self, n):
stats = {}
stats['Top'] = self.top_nodes(n+1)
stats['Pagerank'] = nx.pagerank_scipy(self.G)
stats['Pagerank'] = sorted(stats['Pagerank'].iteritems(), key=itemgetter(1),reverse=True)[0:n+1]
stats['Articulation Points'] = list(nx.articulation_points(self.G.to_undirected()))
stats['Histogram'] = self.degree_histogram()[1:26]
return stats
def networkx_algo():
import networkx as nx
beta = GlobalPara.beta
edges = LoadEdges()
G = nx.DiGraph(edges)
# print(G.edges())
pagerank_dict = nx.pagerank_scipy(G, alpha=beta)
print(pagerank_dict[99])
def lexrank(sentences, continuous=False, sim_threshold=0.1, alpha=0.9):
"""
compute centrality score of sentences.
Args:
sentences: [u'こんにちは．', u'私の名前は飯沼です．', ... ]
continuous: if True, apply continuous LexRank. (see reference)
sim_threshold: if continuous is False and smilarity is greater or
equal to sim_threshold, link the sentences.
alpha: the damping factor of PageRank
Returns: tuple
(
{
# sentence index -> score
0: 0.003,
1: 0.002,
...
},
similarity_matrix
)
Reference:
Günes Erkan and Dragomir R. Radev.
LexRank: graph-based lexical centrality as salience in text
summarization. (section 3)
http://www.cs.cmu.edu/afs/cs/project/jair/pub/volume22/erkan04a-html/erkan04a.html
"""
graph = networkx.DiGraph()
# sentence -> tf
sent_tf_list = []
for sent in sentences:
words = tools.word_segmenter_ja(sent)
tf = collections.Counter(words)
sent_tf_list.append(tf)
sent_vectorizer = DictVectorizer(sparse=True)
sent_vecs = sent_vectorizer.fit_transform(sent_tf_list)
# compute similarities between senteces
sim_mat = 1 - pairwise_distances(sent_vecs, sent_vecs, metric="cosine")
if continuous:
linked_rows, linked_cols = numpy.where(sim_mat > 0)
else:
linked_rows, linked_cols = numpy.where(sim_mat >= sim_threshold)
# create similarity graph
graph.add_nodes_from(range(sent_vecs.shape[0]))
for i, j in zip(linked_rows, linked_cols):
if i == j:
continue
weight = sim_mat[i, j] if continuous else 1.0
graph.add_edge(i, j, {"weight": weight})
scores = networkx.pagerank_scipy(graph, alpha=alpha, max_iter=1000)
return scores, sim_mat
def test_scipy_pagerank(self):
G=self.G
try:
p=networkx.pagerank_scipy(G,alpha=0.9,
tol=1.e-08)
for (a,b) in zip(p,self.G.pagerank):
assert_almost_equal(a,b)
except ImportError:
print "Skipping pagerank_scipy test"
def test_scipy_pagerank(self):
G=self.G
try:
import scipy
except ImportError:
raise SkipTest('scipy not available.')
p=networkx.pagerank_scipy(G,alpha=0.9,tol=1.e-08)
for n in G:
assert_almost_equal(p[n],G.pagerank[n],places=4)
def test_scipy_pagerank(self):
G=self.G
try:
import scipy
except ImportError:
raise SkipTest('scipy not available.')
p=networkx.pagerank_scipy(G,alpha=0.9,tol=1.e-08)
for (a,b) in zip(p,self.G.pagerank):
assert_almost_equal(a,b)
def compute(self, own_public_key):
"""
Compute the reputation based on the data in the TrustChain database using the Temporal PageRank algorithm.
"""
nodes = set()
G = nx.DiGraph()
for block in self.blocks:
if block.link_sequence_number == UNKNOWN_SEQ or block.type != 'tx_done' \
or 'tx' not in block.transaction:
continue # Don't consider half interactions
pubkey_requester = block.link_public_key
pubkey_responder = block.public_key
sequence_number_requester = block.link_sequence_number
sequence_number_responder = block.sequence_number
# In our market, we consider the amount of Bitcoin that have been transferred from A -> B.
# For now, we assume that the value from B -> A is of equal worth.
value_exchange = block.transaction["tx"]["transferred"]["first"]["amount"]
G.add_edge((pubkey_requester, sequence_number_requester), (pubkey_requester, sequence_number_requester + 1),
contribution=value_exchange)
G.add_edge((pubkey_requester, sequence_number_requester), (pubkey_responder, sequence_number_responder + 1),
contribution=value_exchange)
G.add_edge((pubkey_responder, sequence_number_responder), (pubkey_responder, sequence_number_responder + 1),
contribution=value_exchange)
G.add_edge((pubkey_responder, sequence_number_responder), (pubkey_requester, sequence_number_requester + 1),
contribution=value_exchange)
nodes.add(pubkey_requester)
nodes.add(pubkey_responder)
personal_nodes = [node1 for node1 in G.nodes() if node1[0] == own_public_key]
number_of_nodes = len(personal_nodes)
if number_of_nodes == 0:
return {}
personalisation = {node_name: 1.0 / number_of_nodes if node_name in personal_nodes else 0
for node_name in G.nodes()}
try:
result = nx.pagerank_scipy(G, personalization=personalisation, weight='contribution')
except nx.NetworkXException:
self._logger.info("Empty Temporal PageRank, returning empty scores")
return {}
sums = {}
for interaction in result.keys():
sums[interaction[0]] = sums.get(interaction[0], 0) + result[interaction]
return sums
def test_empty(self):
try:
import numpy
except ImportError:
raise SkipTest('numpy not available.')
G=networkx.Graph()
assert_equal(networkx.pagerank(G),{})
assert_equal(networkx.pagerank_numpy(G),{})
assert_equal(networkx.pagerank_scipy(G),{})
assert_equal(networkx.google_matrix(G).shape,(0,0))
def OrigPagerank(self):
""" returns a 2d array containing the pagerank of the origin node for all edges
probas = np.dot(
np.array(nx.pagerank_scipy(self).values(), dtype=float).reshape(-1, 1),
np.ones((1, self.number_of_nodes())))
"""
try:
return self.Orig(nx.pagerank_scipy(self))
except:
return self.Orig(np.ones(self.number_of_nodes(), dtype=float) / self.number_of_nodes())
def TargPagerank(self):
""" returns a 2d array containing the pagerank of the target node for all edges
probas = np.dot(
np.ones((self.number_of_nodes(), 1)),
np.array(nx.pagerank_scipy(self).values(), dtype=float).reshape(1, -1)
)
"""
try:
return self.Targ(nx.pagerank_scipy(self))
except:
return self.Targ(np.ones(self.number_of_nodes(), dtype=float) / self.number_of_nodes())
def save_data(self, filename):
"""Output authors data to a CSV file."""
logger = logging.getLogger("twitter.compute")
with timed(logger.info, "computing pageranks"):
npr = nx.pagerank_scipy(self.g_authors)
wpr = nx.pagerank_scipy(self.g_weighted_authors)
rt_npr = nx.pagerank_scipy(self.g_rt_authors)
rt_wpr = nx.pagerank_scipy(self.g_rt_weighted_authors)
logger = logging.getLogger("twitter.save")
conn = self.engine.connect()
with timed(logger.info, "saving authors to %r", filename):
with open(filename, "wb") as f:
writer = csv.writer(f)
writer.writerow([
"screen_name", "followers", "listed", "friends",
"total_tweets", "tweets",
"rtrank", "rtpercentile",
"in_degree", "out_degree",
"rt_in_degree", "rt_out_degree",
"unweighted_pr", "weighted_pr",
"rt_unweighted_pr", "rt_weighted_pr",
])
def write_row(row):
writer.writerow([str(x) if x is not None else "" for x in row])
format_pr = lambda pr: "%f" % pr
for author_id in sorted(self.g_authors,
key=lambda x: wpr[x], reverse=True):
a = self.authors[author_id]
write_row([
author_id, a.followers, a.listed, a.friends,
a.statuses, a.ntweets, a.rtrank, a.rtpercentile,
a.ninrefs, a.noutrefs, a.ninrts, a.noutrts,
format_pr(npr[author_id]), format_pr(wpr[author_id]),
format_pr(rt_npr[author_id]), format_pr(rt_wpr[author_id]),
])
conn.close()
def personalizedPageRank(self,rootID): personalize = dict((n, 0) for n in self.graph) personalize[rootID] =1 x = nx.pagerank_scipy(self.graph, alpha=0.15, tol=1.e-05, personalization=personalize) sorted_x = sorted(x.items(), key=operator.itemgetter(1),reverse=True) count = 0 result = '' for key in sorted_x: if not self.graph.has_edge(rootID,key[0]) and rootID != key[0]: count += 1 result += rootID+','+key[0]+'\n' if count == 5: break return result
def top_k_with_score(k, g, p = None, alpha = 0.85):
'''
k: the top-k
g: networkx instance
p: personalization dictionary
'''
pr = nx.pagerank_scipy(g, alpha = alpha, personalization = p)
sorted_pr = sorted(pr.items(), key=itemgetter(1), reverse=True)
if k:
top_nodes = sorted_pr[:k]
else:
top_nodes = sorted_pr
return top_nodes
def top_k(k, g, p = None):
'''
k: the top-k
g: networkx instance
p: personalization dictionary
'''
pr = nx.pagerank_scipy(g, personalization = p)
sorted_pr = sorted(pr.items(), key=itemgetter(1), reverse=True)
sorted_nodes = map(itemgetter(0), sorted_pr)
if k:
top_nodes = sorted_nodes[:k]
else:
top_nodes = sorted_nodes
return top_nodes
def candidate_weighting(self, threshold=0.74, method='average',
heuristic=None):
""" Candidate weight calculation using random walk.
Args:
threshold (float): the minimum similarity for clustering,
defaults to 0.74.
method (str): the linkage method, defaults to average.
heuristic (str): the heuristic for selecting the best candidate
for each topic, defaults to first occurring candidate. Other
options are 'frequent' (most frequent candidate, position
is used for ties).
"""
# cluster the candidates
self.topic_clustering(threshold=threshold, method=method)
# build the topic graph
self.build_topic_graph()
# compute the word scores using random walk
w = nx.pagerank_scipy(self.graph)
# loop throught the topics
for i, topic in enumerate(self.topics):
# get the offsets of the topic candidates
offsets = [self.candidates[t].offsets[0] for t in topic]
# get first candidate from topic
if heuristic == 'frequent':
# get frequencies for each candidate within the topic
freq = [len(self.candidates[t].surface_forms) for t in topic]
# get the indexes of the most frequent candidates
indexes = [j for j, f in enumerate(freq) if f == max(freq)]
# offsets of the indexes
indexes_offsets = [offsets[j] for j in indexes]
most_frequent = indexes_offsets.index(min(indexes_offsets))
self.weights[topic[most_frequent]] = w[i]
else:
first = offsets.index(min(offsets))
self.weights[topic[first]] = w[i]
def pagerank(self):
"""Compute pagerank centrality for words coded by Free Association.
Returns
-------
pagerank : dict
The association of each word to its pagerank. FA link weights are
taken into account in the computation. Words with pagerank zero are
removed from the dict.
"""
# Assumes a directed weighted graph.
logger.info('Computing FreeAssociation pagerank')
pagerank = nx.pagerank_scipy(self._norms_graph, max_iter=10000,
tol=1e-15, weight='weight')
self._remove_zeros(pagerank)
logger.info('Done computing FreeAssociation pagerank')
return pagerank
def report(self):
"""Generate a LaTeX report, return as `str`."""
metrics = pandas.DataFrame({
'indegree': self.network.in_degree(),
'pagerank': networkx.pagerank_scipy(self.network, max_iter=200),
})
mean = metrics.mean()
std = metrics.std()
for field, series in self.metadata.items():
successes = 0
for node in random.sample(series.index.tolist(), 100):
value = self.classify(node, field)
try:
if value == series.loc[node] or value in series.loc[node]:
successes += 1
except Exception:
pass
print(field, successes)
def analyze_pagerank(graph, show_table=False, show_plot=False):
"""Run analysis on pagerank."""
if not (show_table or show_plot):
return # expensive computation, skip if unneccessary
indegrees = pandas.Series(graph.in_degree(), name='indegree')
pagerank = pandas.Series(networkx.pagerank_scipy(graph, max_iter=200),
name='pagescore')
table = (pandas.DataFrame({'indegree': graph.in_degree()})
.sort(columns='indegree', ascending=False))
table['indegree_rank'] = pandas.Series(range(1, len(table)+1),
index=table.index)
table = table.join(pagerank).sort(columns='pagescore',
ascending=False)
table['page_rank'] = pandas.Series(range(1, len(table)+1),
index=table.index)
slope, intercept, r_val, p_val, stderr = scipy.stats.linregress(
table['pagescore'], table['indegree'])
if show_table:
print('pagescore and indegree have r == {}'.format(r_val))
print(table.head(10))
def _gen_sim_scores(self, term_matrix, LR_method, pos_seed_vector, neg_seed_vector, pos_weight, neg_weight):
if LR_method == 'unbiased':
#Switch from distance to similarity measures here
weights = -1*(scipy.spatial.distance.pdist(term_matrix.toarray(), 'cosine')-1)
#check weights here and threshold them
weights[weights < .2] = 0
weights[numpy.isnan(weights)] = 0
graph = networkx.from_numpy_matrix(scipy.spatial.distance.squareform(weights))
scores = networkx.pagerank_scipy(graph, max_iter=5000, alpha = .85)
elif LR_method == 'biased':
weights = -1*(scipy.spatial.distance.pdist(term_matrix.toarray(), 'cosine')-1)
#check weights here and threshold them
weights[weights < .2] = 0
nan2zero(weights)
graph = networkx.from_numpy_matrix(scipy.spatial.distance.squareform(weights))
#check if seed is empty and return something with correct format
if str(pos_seed_vector.nonzero()) == '(array([], dtype=int32), array([], dtype=int32))':
pos_seed_scores = scipy.zeros_like(neg_seed_vector)
else:
pos_seed_scores = baseline_scorer(term_matrix, pos_seed_vector)
if str(neg_seed_vector.nonzero()) == '(array([], dtype=int32), array([], dtype=int32))':
neg_seed_scores = scipy.zeros_like(pos_seed_scores)
else:
neg_seed_scores = baseline_scorer(term_matrix, neg_seed_vector)
#add a ballast to act against neg seed scores
ballast = scipy.zeros_like(neg_seed_scores)
ballast[neg_seed_scores == 0] = neg_weight
seed_scores = pos_seed_scores*pos_weight + neg_seed_scores*neg_weight +ballast
scores = biased_lexrank.b_lexrank(graph, seed_scores, personalization = 'biased', alpha=.85, max_iter = 5000, seed_weight = pos_weight)
return scores
