Python i_section_length Examples

Example #1

File: test_neuron.py Project: wvangeit/NeuroM

    def test_get_section_lengths(self):
        ref_seclen = []
        for t in self.neuron.neurites:
            ref_seclen.extend(ll for ll in i_section_length(t))

        seclen = self.neuron.get_section_lengths()
        nt.assert_equal(len(seclen), 84)
        nt.assert_true(np.all(seclen == ref_seclen))

        seclen = self.neuron.get_section_lengths(TreeType.all)
        nt.assert_equal(len(seclen), 84)
        nt.assert_true(np.all(seclen == ref_seclen))

Example #2

File: test_neuron.py Project: wvangeit/NeuroM

    def test_get_section_lengths(self):
        ref_seclen = []
        for t in self.neuron.neurites:
            ref_seclen.extend(ll for ll in i_section_length(t))

        seclen = self.neuron.get_section_lengths()
        nt.assert_equal(len(seclen), 84)
        nt.assert_true(np.all(seclen == ref_seclen))

        seclen = self.neuron.get_section_lengths(TreeType.all)
        nt.assert_equal(len(seclen), 84)
        nt.assert_true(np.all(seclen == ref_seclen))

Example #3

File: test_morphtree.py Project: wvangeit/NeuroM

def test_i_section_length():
    T = SIMPLE_TREE
    nt.assert_equal([l for l in i_section_length(T)], [8.0, 8.0])
    T2 = NEURON_TREE
    nt.ok_([l for l in i_section_length(T2)] == [5.0, 4.0, 4.0])