Python nonzero_section_lengths Examples

Example #1

File: test_morphology.py Project: Tsolmongerel/NeuroM

def test_nonzero_section_lengths_threshold():
    nrn = NEURONS['Neuron.swc']

    ids = check_morph.nonzero_section_lengths(nrn)
    nt.ok_(len(ids) == 0)

    ids = check_morph.nonzero_section_lengths(nrn, threshold=15.)
    nt.assert_equal(len(ids), 84)

Example #2

def test_nonzero_section_lengths_threshold():
    nrn = NEURONS['Neuron.swc']

    ids = check.nonzero_section_lengths(nrn)
    nt.ok_(len(ids) == 0)

    ids = check.nonzero_section_lengths(nrn, threshold=15.)
    nt.assert_equal(len(ids), 84)

Example #3

File: test_morphology.py Project: Tsolmongerel/NeuroM

def test_nonzero_section_lengths_good_data():
    files = ['Neuron.swc',
             'Single_apical.swc',
             'Single_basal.swc',
             'Single_axon.swc',
             ]

    for i, nrn in enumerate(_pick(files)):
        ids = check_morph.nonzero_section_lengths(nrn)
        nt.ok_(len(ids) == 0)

Example #4

def test_nonzero_section_lengths_good_data():
    files = [
        'Neuron.swc',
        'Single_apical.swc',
        'Single_basal.swc',
        'Single_axon.swc',
    ]

    for i, nrn in enumerate(_pick(files)):
        ids = check.nonzero_section_lengths(nrn)
        nt.ok_(len(ids) == 0)

Example #5

File: test_morphology.py Project: Tsolmongerel/NeuroM

def test_nonzero_section_lengths_bad_data():
    nrn = NEURONS['Neuron_zero_length_sections.swc']

    ids = check_morph.nonzero_section_lengths(nrn)
    nt.assert_equal(ids, [134])

Example #6

def test_nonzero_section_lengths_bad_data():
    nrn = NEURONS['Neuron_zero_length_sections.swc']

    ids = check.nonzero_section_lengths(nrn)
    nt.assert_equal(ids, [134])