Python section_path_lengths Examples

Example #1

File: test_feature_compat.py Project: jdcourcol/NeuroM

    def test_get_section_path_distances(self):
        _close(_nrt.section_path_lengths(self.sec_nrn), get('section_path_distances', self.ref_nrn))
        for t in NeuriteType:
            _close(_nrt.section_path_lengths(self.sec_nrn, neurite_type=t),
                   get('section_path_distances', self.ref_nrn, neurite_type=t))

        pl = [_sec.section_path_length(s) for s in i_chain2(self.sec_nrn_trees)]
        _close(pl, get('section_path_distances', self.ref_nrn))

Example #2

File: test_feature_compat.py Project: reddqian/NeuroM

    def test_get_section_path_distances(self):
        _close(_nrt.section_path_lengths(self.sec_nrn), get('section_path_distances', self.ref_nrn))
        for t in NeuriteType:
            _close(_nrt.section_path_lengths(self.sec_nrn, neurite_type=t),
                   get('section_path_distances', self.ref_nrn, neurite_type=t))

        pl = [_sec.section_path_length(s) for s in i_chain2(self.sec_nrn_trees)]
        _close(pl, get('section_path_distances', self.ref_nrn))

Example #3

File: test_neuritefunc.py Project: nagyistge/NeuroM

def test_section_path_lengths():
    path_lengths = list(_nf.section_path_lengths(SIMPLE))
    assert_allclose(
        path_lengths,
        (
            5.,
            10.,
            11.,  # type 3, basal dendrite
            4.,
            10.,
            9.))  # type 2, axon

Example #4

File: test_neuritefunc.py Project: jdcourcol/NeuroM

def test_section_path_lengths():
    path_lengths = list(_nf.section_path_lengths(SIMPLE))
    assert_allclose(path_lengths,
                    (5., 10., 11., # type 3, basal dendrite
                     4., 10., 9.)) # type 2, axon