Python section_radial_distances Examples

Example #1

File: test_feature_compat.py Project: reddqian/NeuroM

    def test_get_section_radial_distances(self):
        _close(_nrt.section_radial_distances(self.sec_nrn),
               get('section_radial_distances', self.ref_nrn))

        for t in NeuriteType:
            _close(_nrt.section_radial_distances(self.sec_nrn, neurite_type=t),
                   get('section_radial_distances', self.ref_nrn, neurite_type=t))

Example #2

File: test_feature_compat.py Project: jdcourcol/NeuroM

    def test_get_section_radial_distances(self):
        _close(_nrt.section_radial_distances(self.sec_nrn),
               get('section_radial_distances', self.ref_nrn))

        for t in NeuriteType:
            _close(_nrt.section_radial_distances(self.sec_nrn, neurite_type=t),
                   get('section_radial_distances', self.ref_nrn, neurite_type=t))

Example #3

def test_section_radial_distances_origin():
    origin = (-100, -200, -300)
    ref_sec_rad_dist_origin = nf.section_radial_distances(NEURON,
                                                          origin=origin)
    rad_dists = fst_get('section_radial_distances', NEURON, origin=origin)
    nt.eq_(len(rad_dists), 84)
    nt.ok_(np.all(rad_dists == ref_sec_rad_dist_origin))

Example #4

File: test_neuritefunc.py Project: nagyistge/NeuroM

def test_section_radial_distances():
    radial_distances = _nf.section_radial_distances(SIMPLE)
    assert_allclose(
        radial_distances,
        (
            5.0,
            sqrt(5**2 + 5**2),
            sqrt(6**2 + 5**2),  # type 3, basal dendrite
            4.0,
            sqrt(6**2 + 4**2),
            sqrt(5**2 + 4**2)))  # type 2, axon

Example #5

File: test_get_features.py Project: nagyistge/NeuroM

def test_section_radial_distances_endpoint():
    ref_sec_rad_dist = nf.section_radial_distances(NEURON)

    rad_dists = fst_get('section_radial_distances', NEURON)

    nt.eq_(len(rad_dists), 84)
    nt.ok_(np.all(rad_dists == ref_sec_rad_dist))

    nrns = [nm.load_neuron(os.path.join(SWC_PATH, f)) for
            f in ('point_soma_single_neurite.swc', 'point_soma_single_neurite2.swc')]
    pop = Population(nrns)
    rad_dist_nrns = [nm.get('section_radial_distances', nrn) for nrn in nrns]
    rad_dist_pop = nm.get('section_radial_distances', pop)
    assert_items_equal(rad_dist_pop, rad_dist_nrns)

Example #6

File: test_get_features.py Project: jdcourcol/NeuroM

def test_section_radial_distances_endpoint():
    ref_sec_rad_dist = nf.section_radial_distances(NEURON)

    rad_dists = fst_get('section_radial_distances', NEURON)

    nt.eq_(len(rad_dists), 84)
    nt.ok_(np.all(rad_dists == ref_sec_rad_dist))

    nrns = [nm.load_neuron(os.path.join(SWC_PATH, f)) for
            f in ('point_soma_single_neurite.swc', 'point_soma_single_neurite2.swc')]
    pop = Population(nrns)
    rad_dist_nrns = [nm.get('section_radial_distances', nrn) for nrn in nrns]
    rad_dist_pop = nm.get('section_radial_distances', pop)
    assert_items_equal(rad_dist_pop, rad_dist_nrns)

Example #7

File: test_get_features.py Project: jdcourcol/NeuroM

def test_section_radial_distances_origin():
    origin = (-100, -200, -300)
    ref_sec_rad_dist_origin = nf.section_radial_distances(NEURON, origin=origin)
    rad_dists = fst_get('section_radial_distances', NEURON, origin=origin)
    nt.eq_(len(rad_dists), 84)
    nt.ok_(np.all(rad_dists == ref_sec_rad_dist_origin))

Example #8

File: test_neuritefunc.py Project: jdcourcol/NeuroM

def test_section_radial_distances():
    radial_distances = _nf.section_radial_distances(SIMPLE)
    assert_allclose(radial_distances,
                    (5.0, sqrt(5**2 + 5**2), sqrt(6**2 + 5**2),   # type 3, basal dendrite
                     4.0, sqrt(6**2 + 4**2), sqrt(5**2 + 4**2)))  # type 2, axon