Python segment_lengths Examples

Example #1

File: test_feature_compat.py Project: juanchopanza/NeuroM

    def test_get_segment_lengths(self):
        _equal(_nrt.segment_lengths(self.sec_nrn.neurites[0]),
               get('segment_lengths', self.ref_nrn.neurites[0]))

        _equal(_nrt.segment_lengths(self.sec_nrn), get('segment_lengths', self.ref_nrn))
        for t in NeuriteType:
            _equal(_nrt.segment_lengths(self.sec_nrn, neurite_type=t),
                   get('segment_lengths', self.ref_nrn, neurite_type=t))

Example #2

File: test_get_features.py Project: nagyistge/NeuroM

def test_segment_lengths():
    ref_seglen = nf.segment_lengths(NEURON)
    seglen = fst_get('segment_lengths', NEURON)
    nt.eq_(len(seglen), 840)
    assert_allclose(seglen, ref_seglen)

    seglen = fst_get('segment_lengths', NEURON, neurite_type=NeuriteType.all)
    nt.eq_(len(seglen), 840)
    assert_allclose(seglen, ref_seglen)

Example #3

File: test_get_features.py Project: jdcourcol/NeuroM

def test_segment_lengths():
    ref_seglen = nf.segment_lengths(NEURON)
    seglen = fst_get('segment_lengths', NEURON)
    nt.eq_(len(seglen), 840)
    assert_allclose(seglen, ref_seglen)

    seglen = fst_get('segment_lengths', NEURON, neurite_type=NeuriteType.all)
    nt.eq_(len(seglen), 840)
    assert_allclose(seglen, ref_seglen)

Example #4

File: test_neuritefunc.py Project: nagyistge/NeuroM

def test_segment_lengths():
    segment_lengths = _nf.segment_lengths(SIMPLE)
    assert_allclose(
        segment_lengths,
        (
            5.0,
            5.0,
            6.0,  # type 3, basal dendrite
            4.0,
            6.0,
            5.0))  # type 2, axon

Example #5

File: test_neuritefunc.py Project: jdcourcol/NeuroM

def test_segment_lengths():
    segment_lengths = _nf.segment_lengths(SIMPLE)
    assert_allclose(segment_lengths,
                    (5.0, 5.0, 6.0,   # type 3, basal dendrite
                     4.0, 6.0, 5.0))  # type 2, axon