def main(argv):
#create new nidm-experiment document with project
kwargs={Constants.NIDM_PROJECT_NAME:"FBIRN_PhaseII",Constants.NIDM_PROJECT_IDENTIFIER:9610,Constants.NIDM_PROJECT_DESCRIPTION:"Test investigation"}
project = Project(attributes=kwargs)
#test add string attribute with existing namespace
#nidm_doc.addLiteralAttribute("nidm","isFun","ForMe")
project.add_attributes({Constants.NIDM["isFun"]:"ForMe"})
#test adding string attribute with new namespace/term
project.addLiteralAttribute("fred","notFound","in namespaces","www.fred.org/")
#test add float attribute
project.addLiteralAttribute("nidm", "float", float(2.34))
#test adding attributes in bulk with mix of existing and new namespaces
#nidm_doc.addAttributesWithNamespaces(nidm_doc.getProject(),[{"prefix":"nidm", "uri":nidm_doc.namespaces["nidm"], "term":"score", "value":int(15)}, \
# {"prefix":"dave", "uri":"http://www.davidkeator.com/", "term":"isAwesome", "value":"15"}, \
# {"prefix":"nidm", "uri":nidm_doc.namespaces["nidm"], "term":"value", "value":float(2.34)}])
#nidm_doc.addAttributes(nidm_doc.getProject(),{"nidm:test":int(15), "ncit:isTerminology":"15","ncit:joker":float(1)})
#test add PI to investigation
project_PI = project.add_person(role=Constants.NIDM_PI, attributes={Constants.NIDM_FAMILY_NAME:"Keator", Constants.NIDM_GIVEN_NAME:"David"})
#test add session to graph and associate with project
session = Session(project)
project.add_sessions(session)
#test add acquisition activity to graph and associate with session
acq_act = Acquisition(session=session)
#test add acquisition object entity to graph associated with participant role NIDM_PARTICIPANT
acq_entity = MRAcquisitionObject(acquisition=acq_act)
acq_entity.add_person(role=Constants.NIDM_PARTICIPANT,attributes={Constants.NIDM_GIVEN_NAME:"George"})
#save a turtle file
with open("test.ttl",'w') as f:
f.write (project.serializeTurtle())
#save a DOT graph as PDF
project.save_DotGraph("test.png",format="png")
def main(argv):
#create new nidm-experiment document with project
kwargs={Constants.NIDM_PROJECT_NAME:"FBIRN_PhaseII",Constants.NIDM_PROJECT_IDENTIFIER:9610,Constants.NIDM_PROJECT_DESCRIPTION:"Test investigation"}
project = Project(attributes=kwargs)
#test add string attribute with existing namespace
#nidm_doc.addLiteralAttribute("nidm","isFun","ForMe")
project.add_attributes({Constants.NIDM["isFun"]:"ForMe"})
#test adding string attribute with new namespace/term
project.addLiteralAttribute("fred","notFound","in namespaces","www.fred.org/")
#test add float attribute
project.addLiteralAttribute("nidm", "float", float(2.34))
#test adding attributes in bulk with mix of existing and new namespaces
#nidm_doc.addAttributesWithNamespaces(nidm_doc.getProject(),[{"prefix":"nidm", "uri":nidm_doc.namespaces["nidm"], "term":"score", "value":int(15)}, \
# {"prefix":"dave", "uri":"http://www.davidkeator.com/", "term":"isAwesome", "value":"15"}, \
# {"prefix":"nidm", "uri":nidm_doc.namespaces["nidm"], "term":"value", "value":float(2.34)}])
#nidm_doc.addAttributes(nidm_doc.getProject(),{"nidm:test":int(15), "ncit:isTerminology":"15","ncit:joker":float(1)})
#test add PI to investigation
project_PI = project.add_person(attributes={Constants.NIDM_FAMILY_NAME:"Keator", Constants.NIDM_GIVEN_NAME:"David"})
#add qualified association of project PI to project activity
project.add_qualified_association(person=project_PI,role=Constants.NIDM_PI)
#test add session to graph and associate with project
session = Session(project)
session.add_attributes({Constants.NIDM:"test"})
#project.add_sessions(session)
#test add MR acquisition activity / entity to graph and associate with session
acq_act = MRAcquisition(session=session)
#test add acquisition object entity to graph associated with participant role NIDM_PARTICIPANT
acq_entity = MRObject(acquisition=acq_act)
#add person to graph
person = acq_act.add_person(attributes={Constants.NIDM_GIVEN_NAME:"George"})
#add qualified association of person with role NIDM_PARTICIPANT, and associated with acquistion activity
acq_act.add_qualified_association(person=person, role=Constants.NIDM_PARTICIPANT)
#test add Assessment acquisition activity / entity to graph and associate with session
acq_act = AssessmentAcquisition(session=session)
#test add acquisition object entity to graph associated with participant role NIDM_PARTICIPANT
acq_entity = AssessmentObject(acquisition=acq_act)
acq_entity.add_attributes({Constants.NIDM["Q1"]:"Q1 Answer",Constants.NIDM["Q2"]:"Q2 Answer" })
#associate person as participant
acq_act.add_qualified_association(person=person, role=Constants.NIDM_PARTICIPANT)
#test add DemographicsAssessment acquisition activity / entity to graph and associate with session
acq_act = AssessmentAcquisition(session=session)
#test add acquisition object entity to graph associated with participant role NIDM_PARTICIPANT
acq_entity = DemographicsObject(acquisition=acq_act)
#add new person to graph
person2 = acq_act.add_person(attributes={Constants.NIDM_FAMILY_NAME:"Doe", \
Constants.NIDM_GIVEN_NAME:"John"})
#associate person2 with assessment acquisition
acq_act.add_qualified_association(person=person2, role=Constants.NIDM_PARTICIPANT)
acq_entity.add_attributes({Constants.NIDM_AGE:60,Constants.NIDM_GENDER:"Male" })
#save a turtle file
with open("test.ttl",'w') as f:
f.write (project.serializeTurtle())