def projectSummary(self):
match = re.match(r"^/?projects/([^/]+)$", self.command)
id = parse.unquote(str(match.group(1)))
self.restLog("Returing project {} summary".format(id), 2)
result = nidm.experiment.Navigate.GetProjectAttributes(self.nidm_files,
project_id=id)
result['subjects'] = Query.GetParticipantUUIDsForProject(
self.nidm_files, project_id=id, filter=self.query['filter'])
result['data_elements'] = Query.GetProjectDataElements(self.nidm_files,
project_id=id)
# if we got fields, drill into each subject and pull out the field data
# subject details -> derivitives / instrument -> values -> element
if 'fields' in self.query and len(self.query['fields']) > 0:
self.restLog("Using fields {}".format(self.query['fields']), 2)
result['field_values'] = []
# get all the synonyms for all the fields
field_synonyms = functools.reduce(operator.iconcat, [
Query.GetDatatypeSynonyms(self.nidm_files, id, x)
for x in self.query['fields']
], [])
for sub in result['subjects']['uuid']:
for activity in Navigate.getActivities(self.nidm_files, sub):
activity = Navigate.getActivityData(
self.nidm_files, activity)
for data_element in activity.data:
if data_element.dataElement in field_synonyms:
result['field_values'].append(
data_element._replace(subject=sub))
if len(result['field_values']) == 0:
raise ValueError("Supplied field not found. (" +
", ".join(self.query['fields']) + ")")
return self.projectSummaryFormat(result)
def projectSummary(self):
GetParticipantDetails_Cached = memory.cache(
Query.GetParticipantDetails)
match = re.match(r"^/?projects/([^/]+)$", self.command)
id = parse.unquote(str(match.group(1)))
self.restLog("Returing project {} summary".format(id), 2)
result = nidm.experiment.Navigate.GetProjectAttributes(self.nidm_files,
project_id=id)
result['subjects'] = Query.GetParticipantUUIDsForProject(
self.nidm_files, project_id=id, filter=self.query['filter'])
result['data_elements'] = Query.GetProjectDataElements(self.nidm_files,
project_id=id)
# if we got fields, drill into each subject and pull out the field data
# subject details -> derivitives / instrument -> values -> element
if 'fields' in self.query and len(self.query['fields']) > 0:
self.restLog("Using fields {}".format(self.query['fields']), 2)
result['field_values'] = []
for sub in result['subjects']:
sub_data = GetParticipantDetails_Cached(
self.nidm_files, id, sub)
for study_type in ['derivatives']:
if study_type in sub_data:
for key, deriv in sub_data[study_type].items():
for element_uri, data_row in deriv['values'].items(
):
field = self.getTailOfURI(element_uri)
if field in self.query['fields']:
result['field_values'].append({
'subject':
sub,
'field':
field,
'datumType':
data_row['datumType'],
'label':
data_row['label'],
'value':
data_row['value'],
'units':
data_row['units']
})
for study_type in ['instruments']:
if study_type in sub_data:
for instrument_uri, instrument_dict in sub_data[
study_type].items():
for instrument_field, instument_value in instrument_dict.items(
):
if instrument_field in self.query['fields']:
result['field_values'].append({
'subject': sub,
'field': instrument_field,
'datumType': '',
'label': '',
'value': instument_value,
'units': ''
})
return self.projectSummaryFormat(result)