def test_flm_reporting(use_method):
with InTemporaryDirectory():
shapes, rk = ((7, 8, 7, 15), (7, 8, 7, 16)), 3
mask, fmri_data, design_matrices = write_fake_fmri_data_and_design(shapes, rk)
flm = FirstLevelModel(mask_img=mask).fit(
fmri_data, design_matrices=design_matrices)
contrast = np.eye(3)[1]
if use_method:
report_flm = flm.generate_report(
contrast, plot_type='glass', height_control=None,
min_distance=15, alpha=0.001, threshold=2.78)
else:
report_flm = glmr.make_glm_report(flm, contrast, plot_type='glass',
height_control=None,
min_distance=15,
alpha=0.001, threshold=2.78,
)
'''
catches & raises UnicodeEncodeError in HTMLDocument.get_iframe()
Python2's limited unicode support causes HTMLDocument.get_iframe() to
mishandle certain unicode characters, like the greek alpha symbol
and raises this error.
Calling HTMLDocument.get_iframe() here causes the tests
to fail on Python2, alerting us if such a situation arises
due to future modifications.
'''
report_iframe = report_flm.get_iframe()
# So flake8 doesn't complain about not using variable (F841)
report_iframe
del mask, flm, fmri_data
def test_slm_reporting():
with InTemporaryDirectory():
shapes = ((7, 8, 9, 1), )
mask, FUNCFILE, _ = write_fake_fmri_data_and_design(shapes)
FUNCFILE = FUNCFILE[0]
func_img = load(FUNCFILE)
model = SecondLevelModel()
Y = [func_img] * 4
X = pd.DataFrame([[1]] * 4, columns=['intercept'])
model = model.fit(Y, design_matrix=X)
c1 = np.eye(len(model.design_matrix_.columns))[0]
report_slm = glmr.make_glm_report(model, c1)
# catches & raises UnicodeEncodeError in HTMLDocument.get_iframe()
report_iframe = report_slm.get_iframe()
# So flake8 doesn't complain about not using variable (F841)
report_iframe
# Delete objects attached to files to avoid WindowsError when deleting
# temporary directory (in Windows)
del Y, FUNCFILE, func_img, model